BtaEX0031450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018855 | SCAF4
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr1:3077173-3082218:+
Coord C1 exon
chr1:3077173-3077312
Coord A exon
chr1:3077895-3078071
Coord C2 exon
chr1:3082034-3082218
Length
177 bp
Sequences
Splice sites
3' ss Seq
CAGTTTTCCCATTCTTTAAGCTT
3' ss Score
6.14
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTTCACCTCCACCTCCAGTTAAAGTTTCTTCTGAACCTCCACAAGCCACTACAAACTCTGTACCAACTGTACCGCAGTTGCCCAGCTCTGATGCTTTTGCTGCTGTGGCCCAACTGTTTCAGACAACTCAAGGTCAACAG
Seq A exon
CTTCAGCAGATCCTTCAGACTTTTCAACAGCCTCCAAAACCACAGTCTCCCGCCATTGACAATGCCGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAGCTCCTACACAACCACCTGAACAAAAAGCTGCTTTCCCCCCACCTGAACAAAAAACTGCATTTGACAAG
Seq C2 exon
AAGCTACTTGATAGATTTGATTATGATGATGAGCCAGAAGCAGTGGAAGAATCCAAGAAAGAAGATGCTGTTGCCGCCTCGGCCACCACAACACCTGCTCCTGCCGCTGTTGTGCCCACTACGCCGGCCACCGCCACCGCACCTTCTGTGGCTGCGCCCACTGCCTCTCCTCCACAGGCACCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018855_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCAGCTCTGATGCTTT
R:
CCTGTGGAGGAGAGGCAGTG
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development