MmuEX0041107 @ mm9
Exon Skipping
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90252502-90258366:-
Coord C1 exon
chr16:90258227-90258366
Coord A exon
chr16:90257498-90257647
Coord C2 exon
chr16:90252502-90252695
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAGTTTTCCCATTCTTTAAGCTT
3' ss Score
6.14
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GCTCACCTCCACCCCCAGTAAAAATCTCTTCTGAACTTGCACAAGCTCCCACAAATTCCATGCCTACTGTAGCCCAGCTGCCCAGCTCCGATGCCTTTGCTGCTGTGGCTCAGCTGTTCCAGACAACTCAAGGCCAGCAG
Seq A exon
CTTCAGCAGATCCTTCAGACTTTTCAACAGCCTCCACAACCACAGTCTCCCGCCCTTGACAGTGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAGCTCCTACACAGCCACCCGAGCAAAAAACTGCATTTGACAAG
Seq C2 exon
AAGCTGCTTGATAGATTCGATTACGATGACGAGCCAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGCCCTCTGCTACCTCTCCCCCTCCTCCACAGACCCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.543 A=0.870 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTACTGTAGCCCAGCTG
R:
AGGGGGAGAGGTAGCAGAGG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types