DreEX0064301 @ danRer10
Exon Skipping
Gene
ENSDARG00000077093 | scaf4a
Description
SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
Coordinates
chr10:25748004-25749591:-
Coord C1 exon
chr10:25749449-25749591
Coord A exon
chr10:25749154-25749330
Coord C2 exon
chr10:25748004-25748092
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTTACTCGTGCTTTCTGAAGCTT
3' ss Score
4.92
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
CTTCTCCACAGTCTCCCGTGAGGGAACAGGAGGCTCATCCTGTGGTGACGACAAACTCAATTGTAGCAGCTGTGCCTCAGCTTCAGAACTCGGATGCCTTTGCTGCAGTTGCTCAGCTAATTCAGTCTTCTCAAGGACAGCAG
Seq A exon
CTTCAGCAGATGCTGCAGAACTTTCAGCCACCAGGGAAACCTCAGTCTCCGGTGGTGGACAATAACAGGAGTCATCTCCATCTACAAGCCCAGGCTATAGCACCCCCATCCACCATCCCACATCAGCACATCCATCACGCACCGCAGCCTGTGGAAAAGAAAGCCACCTTCGACAAG
Seq C2 exon
ACAATTCTTGACCGCTTTGACTATGACGATGAGCCAGATGCAGGAGAGGATGCCAAGAAGGAGGAAGCGCAGTCTGTCCAACCTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077093_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCACAGTCTCCCGTGAG
R:
TAGAAGGTTGGACAGACTGCG
Band lengths:
230-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]