RnoEX0078256 @ rn6
Exon Skipping
Gene
ENSRNOG00000002104 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:RGD Symbol;Acc:727896]
Coordinates
chr11:30395631-30401772:-
Coord C1 exon
chr11:30401633-30401772
Coord A exon
chr11:30400933-30401082
Coord C2 exon
chr11:30395631-30395824
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAGTTCTTCCGTTCTTTAAGCTT
3' ss Score
6.15
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GCTCACCTCCACCCCCAGTAAAAGTCTCTTCTGAACTTCCACAAGCTCCCACAAACTCCATGCCTGCTGTCCCACAGCTGCCCAGCTCCGATGCCTTTGCTGCCGTGGCTCAACTGTTTCAGACAACTCAAGGCCAGCAG
Seq A exon
CTTCAGCAGATCCTTCAGACTTTTCAACAACCTCCAAAACCACAGTCTCCCGCCCTTGACAGTGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAGCTCCTACACAACCACCTGAGCAAAAAACTGCATTTGACAAG
Seq C2 exon
AAGCTGCTTGACAGATTTGATTATGATGATGAGCCAGAAGCTGTGGAAGACTCGAAGAAAGAGGATGCTGTCGCCGTTGCCACCACAGCCCTTGCCACGGCTGCACCTCCTGTGCCCGCTGCAGCCACACCTGCTGTTGCTCCTGCTGTGCCTGCGTCCTCTGCTACCTCTCCCCCTCCTCCACAGGCGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002104_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.900 C2=0.877
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCCCACAAACTCCATGC
R:
CAGGAGCAACAGCAGGTGTG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]