HsaEX0057658 @ hg19
Exon Skipping
Gene
ENSG00000156304 | SFRS15
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:19304]
Coordinates
chr21:33068882-33074231:-
Coord C1 exon
chr21:33074089-33074231
Coord A exon
chr21:33073308-33073484
Coord C2 exon
chr21:33068882-33069063
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTCCCATTCTTTAAGCTT
3' ss Score
7.37
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GCTCACCTCCACCTCCAGTAAAAGTTTCTTCTGAACCTCCCACACAAGCCACTCCAAACTCCGTCCCAGCTGTACCACAGTTGCCCAGCTCTGATGCTTTTGCTGCTGTGGCTCAGCTGTTTCAGACAACTCAAGGCCAACAG
Seq A exon
CTTCAGCAGATCCTTCAGACTTTTCAACAGCCTCCAAAACCACAGTCTCCTGCCCTTGACAATGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAACTCCTACACAACCATCTGAACAAAAAGCTGCTTTCCCCCCACCTGAACAGAAAACTGCATTTGACAAG
Seq C2 exon
AAGTTGCTTGATAGATTTGACTATGATGATGAGCCAGAAGCTGTGGAAGAATCAAAGAAAGAGGATACCACTGCCGTCACCACGACAGCACCTGCTGCCGCAGTACCCCCTGCACCCACCGCCACCGTGCCTGCTGCTGCTGCACCCGCTGCTGCCTCTCCTCCTCCTCCACAGGCACCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.597 A=0.997 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCAGCTCTGATGCTTTT
R:
AATGGTGCCTGTGGAGGAGG
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)