GgaEX6004206 @ galGal4
Exon Skipping
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:104013350-104014579:-
Coord C1 exon
chr1:104014440-104014579
Coord A exon
chr1:104013792-104013968
Coord C2 exon
chr1:104013350-104013450
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATATATGTTTTTTTTGTAGCTT
3' ss Score
8.63
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTTCGCCACCCCCTCCAGCAAAGGTTGCTTCGGAGCCCTCTCAAGTCACTGCTAACTCAGTACCTACTATGCCACAGTTGCCCAGTTCTGATGCCTTTGCAGCTGTAGCTCAGTTGTTTCAAACAACGCAAGGACAGCAG
Seq A exon
CTTCAGCAAATTCTTCAGACTTTTCAGCAGCCTCAAAAAGCTCAGTCTCCGGTCATAGATAACACTGTGATGGCTCAGGTTCAAGCTATTACTGCTCAGTTGAAAACTACAGCATCACAACCACCAGAACAAAAAGCTGCTTTCCCACAACCCGAGCAAAAAACATCATTTGACAAA
Seq C2 exon
AAGCTGCTAGATCGGTTTGACTACGACGATGAACCAGAAGCAGTGGAAGACTCAAAGAAAGAAGATTCAGCTCCTTCTCCTTCAGTTTCTCAGCCTGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-'10-12,'10-10,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.864 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCCTCCAGCAAAGGTT
R:
AGGCAGGCTGAGAAACTGAAG
Band lengths:
234-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]