MmuEX6074961 @ mm10
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3164147-3193082:+
Coord C1 exon
chr17:3164147-3164277
Coord A exon
chr17:3185761-3185874
Coord C2 exon
chr17:3193014-3193082
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAAGGACTTTTCTCTCATAGATG
3' ss Score
6.41
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAACACCCGTGACACCTGTTACTCCAGCCAATGTGGTCCAAGGCTTACCTGATCCATGGGTATCTCAGATAGCAAACACAGACACACTGGCAGCTGTTGCTCAGATCCTACAAAGTCCTCAAGGTCAACAG
Seq A exon
ATGATTCCACCCAGGGGCTGTGCATATGTCTGCATGGTTCATCGACAAGATTCATTTCGGGCTCTTCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
Seq C2 exon
GTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTCCCCCTGCAATCCCACCGGTAGTACCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201_MULTIEX1-8/11=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.000 C2=0.708
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=FE(55.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCGTGACACCTGTTACT
R:
TGTTGGTACTACCGGTGGGAT
Band lengths:
197-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types