RnoEX0078265 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44082793-44084765:+
Coord C1 exon
chr1:44082793-44082893
Coord A exon
chr1:44083343-44083442
Coord C2 exon
chr1:44084609-44084765
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCATAGATGATTCCACCCAGGGG
3' ss Score
2.13
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAGCAAGATTTAACCAACCTTTTTGAGGAGTTTGGGCAAATCGAATCCATTAAT
Seq A exon
GGGCTGTGCATATGTCTGTATGGTTCATCGACAAGATTCATTTCGGGCTCTCCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
Seq C2 exon
ATTGCCTGGGCTTTGAACAAAGGTGTAAAGACAGAATACAAACAGTTCTGGGACGTGGATCTTGGAGTCACATATATACCCTGGGAAAAAGTTAAAGTAGATGACTTGGATGGCTTTGCAGAGGGAGGCATGATTGATCAGGAAACTGTAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'23-24,'23-23,24-24
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PD(15.8=44.1),PF0007617=RRM_1=PU(41.8=82.4)
A:
PF0007617=RRM_1=FE(55.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCACTACTCTCTGGGT
R:
TCCTGATCAATCATGCCTCCCT
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]