HsaEX6050105 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155136850-155141467:+
Coord C1 exon
chr6:155136850-155136950
Coord A exon
chr6:155139613-155139726
Coord C2 exon
chr6:155141311-155141467
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAAACAATTTTTTTTATTAGATG
3' ss Score
5.88
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TATGTAGTACTACTCTCTGGGTTGGGCAAGTGGACAAGAAGGCAACACAGCAAGACTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAATCCATTAAT
Seq A exon
ATGATTCCTCCCCGGGGCTGTGCTTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTGGATCATATAAAATTGGGTCCAAGGTCATTAAG
Seq C2 exon
ATCGCTTGGGCTTTAAACAAAGGTGTAAAAACAGAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACATATATACCATGGGAAAAAGTTAAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAGACTGTAAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(24.1=100),PF086487=DUF1777=PD(14.9=41.2),PF0007617=RRM_1=PU(41.8=82.4)
A:
PF064956=Transformer=PD(7.3=26.3),PF0007617=RRM_1=FE(55.2=100)
C2:
PF120393=DUF3525=PU(42.7=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTCTCTGGGTTGGGCAA
R:
ACAGTCTCCTGATCAATCATGCC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)