BtaEX6050096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92857662-92862078:+
Coord C1 exon
chr9:92857662-92857762
Coord A exon
chr9:92860163-92860276
Coord C2 exon
chr9:92861922-92862078
Length
114 bp
Sequences
Splice sites
3' ss Seq
GAAAAAAAATTTTTTAACAGATG
3' ss Score
5.84
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TATGCAGTACTACTCTGTGGGTCGGTCAGGTGGACAAGAAGGCAACACAGCAGGATTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAGTCCATTAAT
Seq A exon
ATGATTCCTCCCAGAGGCTGTGCGTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTTAGTTCCGGCTCGTATAAAATTGGATCCAAGGTCATTAAG
Seq C2 exon
ATTGCTTGGGCTTTAAACAAAGGTGTGAAAACAGAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACGTATATACCATGGGAGAAAGTTAAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAAACTGTAAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'20-18,'20-16,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.189
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(23.4=100),PF0007617=RRM_1=PU(41.8=82.4)
A:
PF064956=Transformer=PD(7.1=26.3),PF0007617=RRM_1=FE(55.2=100)
C2:
PF120393=DUF3525=PU(42.7=60.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTCTGTGGGTCGGTCAG
R:
ACAGTTTCCTGATCAATCATGCCT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]