HsaEX6050105 @ hg38
Exon Skipping
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154815716-154820333:+
Coord C1 exon
chr6:154815716-154815816
Coord A exon
chr6:154818479-154818592
Coord C2 exon
chr6:154820177-154820333
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAAACAATTTTTTTTATTAGATG
3' ss Score
5.88
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TATGTAGTACTACTCTCTGGGTTGGGCAAGTGGACAAGAAGGCAACACAGCAAGACTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAATCCATTAAT
Seq A exon
ATGATTCCTCCCCGGGGCTGTGCTTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTGGATCATATAAAATTGGGTCCAAGGTCATTAAG
Seq C2 exon
ATCGCTTGGGCTTTAAACAAAGGTGTAAAAACAGAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACATATATACCATGGGAAAAAGTTAAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAGACTGTAAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.142
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(24.1=100),PF0007617=RRM_1=PU(41.8=82.4)
A:
PF064956=Transformer=PD(7.3=26.3),PF0007617=RRM_1=FE(55.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTCTCTGGGTTGGGCAA
R:
ACAGTCTCCTGATCAATCATGCC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains