GgaEX1050984 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52248157-52250890:+
Coord C1 exon
chr3:52248157-52248257
Coord A exon
chr3:52250081-52250194
Coord C2 exon
chr3:52250734-52250890
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGATTTTTGTTTTCAATAGATG
3' ss Score
9.39
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTTGCAGCACTACTCTTTGGGTAGGCCAAGTAGACAAGAAGGCTACACAGCAAGATTTGACCAACTTATTTGAAGAATTTGGACAAATAGAATCTATTAAT
Seq A exon
ATGATTCCCCCAAGAGGTTGTGCGTATGTCTGCATGGTTCATAGACAAGATGCATATCGTGCTCTTCAGAAGCTTAGTTCTGGGTCCTACAAAATCGGATCTAAAATTATTAAG
Seq C2 exon
ATTGCCTGGGCTTTAAATAAAGGTGTAAAAACAGAGTATAAGCAATTCTGGGATGTGGATCTGGGAGTTTCATATATTCCTTGGGAGAAGGTAAAATTGGATGATTTGGAGGGCTTTGCTGAGGGTGGCATGATTGACCAGGAGACAGTAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'15-23,'15-21,16-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(41.8=82.4)
A:
PF0007617=RRM_1=FE(55.2=100)
C2:
PF120393=DUF3525=PU(41.0=60.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGCACTACTCTTTGGGT
R:
CTCCTGGTCAATCATGCCACC
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]