MmuEX6074961 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3185064-3187745:+
Coord C1 exon
chr17:3185064-3185164
Coord A exon
chr17:3185761-3185874
Coord C2 exon
chr17:3187589-3187745
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAAGGACTTTTCTCTCATAGATG
3' ss Score
6.41
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAGCAAGATTTAACCAACCTTTTTGAGGAATTTGGACAAATTGAATCCATTAAT
Seq A exon
ATGATTCCACCCAGGGGCTGTGCATATGTCTGCATGGTTCATCGACAAGATTCATTTCGGGCTCTTCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
Seq C2 exon
ATTGCCTGGGCTTTGAACAAAGGTGTAAAGACAGAATACAAACAGTTCTGGGATGTGGATCTTGGCGTCACATATATACCCTGGGAAAAAGTGAAAGTAGATGACTTGGATGGCTTTGCAGAGGGCGGCATGATTGATCAGGAGACTGTAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'22-27,'22-26,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PD(17.3=50.0),PF0007617=RRM_1=PU(41.8=82.4)
A:
PF0007617=RRM_1=FE(55.2=100)
C2:
PF120393=DUF3525=PU(42.7=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCACTACTCTCTGGGT
R:
TCTCCTGATCAATCATGCCGC
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: