MmuALTA0015881-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3171103-3177224:+
Coord C1 exon
chr17:3171103-3171220
Coord A exon
chr17:3177090-3177092
Coord C2 exon
chr17:3177093-3177224
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCGT
5' ss Score
6.16
3' ss Seq
AGACATTTGTTTGTTCTCAGCAG
3' ss Score
4.16
Exon sequences
Seq C1 exon
CTCTCACGTTTCAGAGTCTGTGAACAACTCCATCTTCCATCAGATAGCAGAACAGCTGCAGCAGCAGAACTTGGAGCAGTTGCGACAGCAGCTCCTGGAGCAGCAGCAGCCTCAGAAG
Seq A exon
CAG
Seq C2 exon
GTAACTCCTCAAGATAGCCAGGAGGGGACATTTGGGTCTGAGCACTCAGCTTCTCCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAATTTAGATGATTCCATAGACATTCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-26-29,26-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAACTTGGAGCAGTTGC
R:
GTGCTCAGACCCAAATGTCCC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types