GgaINT0081780 @ galGal3
Intron Retention
Gene
ENSGALG00000014463 | ACTN2_CHICK
Description
NA
Coordinates
chr3:39135897-39137508:-
Coord C1 exon
chr3:39137423-39137508
Coord A exon
chr3:39135990-39137422
Coord C2 exon
chr3:39135897-39135989
Length
1433 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TTATTTGCTATATTTTATAGGCT
3' ss Score
8.75
Exon sequences
Seq C1 exon
ATATTGTGAACACTCCCAAACCTGATGAGAGAGCTATCATGACATATGTGTCCTGCTTCTACCATGCTTTTGCTGGAGCAGAGCAG
Seq A exon
GTATTAATCGATTGTCCCTTCAGGTTGCTGTGTTTTTGATTATTTTACTTTTCCACTCGTTTATAACAAAACAAAAAAACATCCCCCCCCCCCCCCAAAAAAAAAAAACAACCAACCAAACTCACTAATTTTGTGTTTTGCTGTTTTAATTAACAATTGCAAGTATTACTTGAGCACTAATACTTGTTTTTAACCAGCACTGAACCTGTTTTAGTTAAATCTTGCGTAGCAAGTTGAACCTTTTTATTTTAATAGATATTTGTGATTCTAATGTTGAGAGTCTTTGGTGATTGTAAAGACCATTTCAGAAAAACTGTATTTGAAGATACTGTGAAACGGAATTTTTTGTTGCTACATCAACATCTTATGCTTTTGCTGCATAAAATCATGTTTGACTTCTGGAGACTGAGAGTATTCTGGACTTATTCATTCTGAGTAGTAATTTAGGGCTGCCTAGAGATGTGGAGAGGCAAAGAAGTTTCCCACAGCAGTATTTGCACCTGGCTGCTACTGAAGCCAGTGGAATTATTTGTAGACCAAAGTGTTGGTATAAGAAGCAAGAGTATCAGCAGATCTATCATACAGGATGGTATTATAACAAATGTTGCATTTTCATCTGCTGTATTTCTTACATTTCTAGTCTACAAATGGACACAAACCAACTTATGTGGAGAGAAAAAAAATGCCTTAAAGTAGTTGATATTTTTCCATCTTCCTCTGAATTGAATTTCCCTTCCTATCTGGTAGGCCTCCTACACCATATTGTAGCACAGCTATGCTGTTGTGCATTGTTCCATCTGGGTGTGCAGGTTTGGCTATTAATAGAAAAGAAAGATTCCAAATACTATTTTTCAGTTGACTGGATATATTTCAGATTCGCATCTATATGAAATTATAAATTTGTGACATGGAACTATTAATCTCAGTTTCAAATATGGCAGAGCTACAGTGCTTTTAGAAATAAATTTGGCAGGAGTCTAGAAAAGATTTGCTGTCAGTAGTTAAACTGTGTCTATTTTCAAGGGTGTATGTGCATGTGGGTCCCCTGAATTGCATCCAGTTTTTCCTCTGTAGCTAACAAACCTAATACCTTTTTAGTGTGCTTTAAAAAATTAACCGAATAAGATAACTTTAAGAATGGCTTCAGTTGCTTTTGAAAGTAAAATATTTATTAAACAACTATAATGACAGTGTGAAATTCCCCCTTGTACAGTAAGGCTTAATTGACTCAGTGACTTCTGTGCCAATCTATGCCTCATTTAAGACCACCAGTGTCTGTGAGTATAGAAGGAGGGTGACCTAGAAGCATAAATCAACAACTTTAAACCAATGTCATTTTTATTTGCAGCTGACATGTTATCTTTCTTTCTCCAAGCCTGTACCTTTCTCAGGATGTTTACAAGTATGTCCTGTTTATTTGCTATATTTTATAG
Seq C2 exon
GCTGAGACTGCAGCAAACCGGATCTGTAAGGTGCTTGCTGTGAATCAAGAAAATGAGAGGTTGATGGAAGAGTATGAGAGACTTGCAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463:ENSGALT00000023354:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]