MmuINT0010444 @ mm9
Intron Retention
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12386577-12388827:-
Coord C1 exon
chr13:12388742-12388827
Coord A exon
chr13:12386670-12388741
Coord C2 exon
chr13:12386577-12386669
Length
2072 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TTACCTATTGTGTTTTGCAGGCC
3' ss Score
10.89
Exon sequences
Seq C1 exon
ACATTGTCAACACTCCCAAACCCGATGAAAGAGCCATCATGACTTACGTTTCCTGCTTCTACCATGCTTTCGCGGGAGCGGAGCAG
Seq A exon
GTACTCCTCCCCTGTGCGCGCAGCCGACCGCGCTGCTCTTCCGTGTGCGCGTGTGCATCTCTGGGTGTGTGTCTGTGTGCTTCACATCTGACCTTGGAATATCAGTGTTTCATAACGACCTAACACAGCAAGTTCCCAACTGCTAGTCATCTTAAAAAATCCAATCACTCACACAAACAAGCAAAAAAATCCTTTAGACCATAACCAAAGTGTTTTTCTTCTATTCCCCGCCCCCCAGGATATGTCTTCCATTTTATTAGAAGACTGTTAGAAACATTTGTACATTCTGGGGAGCAGAGTGCCTTGAAGGGTGTGCTGCATGCATTGAGTGGCGAAGGGCAGGCGACTAGGAGACAGAAATGCCTCTGCCATGTTTGTTGTTCTTGGTTGCCTGGAAACGACCTTTTATTCAGTGGTTTGCTCCATTATAACAGACTAACTGTATGTTTAGTCGACGGAACAAAAGGGTTACGACCTCAGAAGCACTCACCTGCCTCAGAACAGTTTGAGGGAAATTATGAGAGACCAGTCATCCACCTCCTGCAGCTTCATCTGTCTCTGCTGCTCACCCCTGTACGTGGGGAACCCTTATGGACGGACAGACAGAATGTGCCCTGTTTCTGCCATCTTTGTAAAGGCCACCACTGAGAGATGATGGTAATCGGGATCATTGTGCTCAGGAGAATTAGGGCTTTAGAGGGCCGGACTTTGGGGAGAGTGTCCAGTGGCTTCTCTAGGCCAAGTTTTGGATTGTCCTGGGCTGCACAGTGGTGTCCAATCTGTAGCCAAAGGTTGCAAAAATGTGCGTGTATTTACTTGGCCTTACACTGAAACATGATATTGTCACCTACAAAGTTCACACTCAAGAACTCTGTAATGAAGTCTCACACACACATGCACACGCACAAGCACAGGCACACGCACACACACATTTAAGTTGGATTGGTGGGATGGCTTAGACAATAAAAGCACTTGCTGCTAAGCCTGACATCCTGAGTTCAACCCCCAGGACCCACATGGTAGAAAAAGAGAAGACACTACAAATTGTCCTGATGTCCACATATGTGTCTTTATACACATAATCTACACCTGTGCCCAGTCATTGTACACACACATACACACACACATGAAATAAAATGTAAAAACAACAAGTAAAGCCAGGCATGGGAGTATACTCCTTAAATCTCATATCTTGGGAGACAGAGGCAAGCAGATTTCTGTAAATTTGAGGCCAGCCTGGTCTACGTATTGAGTTCCAGGCCAGCCAGGACTACATAGTGAGTGAGACTCTGTCTGAAAACAAAGAAACGTCTCCCTCCAAAAAGCCCAAAGAATTCAATACTTTACTACTTGGTGTTGGGATATATTCATTGCTATCCTGGTTACATGTGGCACCTGGGTCATGAGTTGGACACCTCTGCTTTAGAACAGGCACAGCGCTCTTCTTGGTCCATCCTAGAAACGTGTTAAGAGGCACGTGACTCAAGTTCCCTTCAAGATAATGACCAAGGATTATGTATTGGTTCATTGTATTTACTGCTCTTGTAGATTAAACAATGAAACAACATCTTAAGGCACGCTCATCTCCAACATCCCATCTAGAAAGTTCTTCCATGGATTCAAGGTCAATAACATGGATACATTCAGGACCCAACCTCTTCAGCTTTGATTTCTGAAGGCCAGGGTCATTCCAACCCATAGCCGTAGGGTCTATTCAGGAGTATTTAGCTGGATAGTCAGGGACCTGAGACCTTGGTTTCCTCGACCTACATATTTCTGTTACTAACTTGCTTGATGTTTTATAAAGTTTGTACTTTAGACTAATGATATCTCCCCATTATTCCCTACAGTATATTCAGCCTGCCGTGTAAGTCTGTGTGAAAACTAAAAAAAAAAAAAAAAAAAAGGTGTGAACTGATTCACCCCCTCTATCTTCCCCACCCTGACCCAGACTGCACCATCTTCAGCACGCCCTCTTCTCCATCCTGCCCCGCCCCCACATCTGGCTTTACGTGTGTCTGCGAGCATACCCTCGTCGCCCAGCCATCCTGTTTACCTATTGTGTTTTGCAG
Seq C2 exon
GCCGAGACAGCAGCTAACAGAATATGTAAGGTTCTTGCTGTGAATCAAGAGAATGAGAGGCTGATGGAAGAATATGAGAGGCTAGCGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374-Actn2:NM_033268:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.207 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: