GgaINT0081790 @ galGal4
Intron Retention
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36953275-36959184:-
Coord C1 exon
chr3:36959038-36959184
Coord A exon
chr3:36953341-36959037
Coord C2 exon
chr3:36953275-36953340
Length
5697 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
TATGTTATTTTGGTCAATAGAGG
3' ss Score
4.34
Exon sequences
Seq C1 exon
CATATCCGTGTTGGATGGGAGCTCCTACTTACTACCATTGCTCGAACTATCAATGAGGTTGAGACTCAGATCCTCACAAGAGATGCCAAGGGTATCACCCAGGAGCAAATGAATGACTTCAGAGCATCATTCAATCATTTTGACAGG
Seq A exon
GTACAGTACTCCTGCCTTTTCTCATCTAGCAATATTCATTGTTCCCAAAAGCAAGTCTCCTTCCATTTCATATATAATCTTAAAAATCTGCTAATGCAGTAACAATAAGCTATTTTTAAAATGGTTCTAAAGATCAATTAACAAAGTATTTATAACCTTATGAAATCTTAGCATTATACACATACCCTACTCTCTCTAAATGTAATGCAAATTACTGTTCTGCTAGTATTGTTGAGTACTTGTTCAAATAACAGACAGGGTTGGATACACTGTGTTTTGGAAAATAATGTGCCCTTTTACATTAAGGCAGTGCAGCATGGCTTCCACTTCATTAAATGTAGCAGTAATCTTGATTACAATATTTTTGTTTACTTCTTTGAATCACATCTTGTTGCTCTAGAAGTAGATCTGTGGGGAATATAGCTAGGGCACTGATAGTTGCCAAGGAAAATCCTTTATCTTCCTGTCTGTAAGTGGGAAATAAGAGCCTGTATGTTTCATTTATCTAATAAGTAATGAATAAAAAAGTAGGAATCAAAACACTTTTATGAAGAAACTTAACTCACTCATTCTGTGATTTGTACAGTGCAGTCACAATAGAGCGATTATATTCTTAGAAGCATAATGTAAGTTTAAGAAAGGAAAAAAATGAACTCTAAAACCACTCAGCCTTCAAGCCAAGCTTTCTGTAAAGGACAGACAACAGAAACACTAAAAAAAGAGAAGCTTATACTGGTTAAATTGCACTGTAATTTAAAGGGCAGATATGCCATGATCTGCACAGGATAGAAGGAGACACTGAGCAAGGTGTCTGAGGGGACCAGGCTTGTTTTTGATTTCTGTATCCTCCTTGTTCCACTGCACACTTGAAAATTTATTGTCAGTGAATGAAGGAAACCTGGCATGCTTCAGGGATACTTCTGAGTACACAAAATAATGAAGATTCTAAACTTGGAAATTAGATAGAGAGGGCAGGAATTGATTTTTTTTTTCAGTCTTGACCACCTCAAAGAAATGAAGATGAACATAAGCACTAACATGAAAGTACCGACTTCTCCATGTTAGACCCCCCCCTCCCCCCAAAAAAAGCAGTCATTTAGCAGTATATGTAATAATTCTGTTGCTCATAGGAGCATTTCTCTATACCTGACGTACTCTGAAAATACACTGAAAGAATTAGTCTGCGATTCATATTGATGGATAGCCAGAAAAGATTTTAGAAACTAACGCTGTCCTTGAGCAGGAGGCCTTAAATACATACGGAAAACTGAGTCATTTTATGCATGCTATAGCTCTGACTTGTATGGTGGCATTTCTCCACTTTAAGAAACATCTTAATGTTTGACTCTTAATGTGTGTTGAGGATGTCAGCAAAATATTAATGTGCAGAGCAGCCCCCTTCTCCATTTTAAAGAACCCATTTTAGTATACATAAACCTAACAGTTCTTTATAGAGTACTTCGAAAGAGAACTTGCTTTAGTTATAAATCTGAGGAAGGAACCCCTTTCTTCCTCTCCAGGAAAGAAAGCAAATAACACGTATATATGGGGTTTTTTTTCAGTTTATAATAAATCATGGGGCTTAATTCTGTGGTTGTTAGCTTTTTGGAAGATAGCTAAGTTATTATTTTAAATGGCTTCTGCATCTTGAATATTTAAAAGAAAGCTATTAGATATTTTGTAAGTTTTTGTTTGGGGCTATGTGCCCCTGACCCCCTAAATTACACTGAGTAAGGAGACACCGTGCATGGAAGAATAATAAGGGCAGAAAGAGCTTGTGTTTCCTACAGTATATCCACCAGCACAGCTATGCTAGCACAAAAAATCCATTAAAAGTCATCTTGTTAAAGTCAAATGGTAAGTACACTAACTCCCTTGAGGCAAAGGGGAAGCCCTCTAGGATCTTCTCTTTCAAATTACAGGCGGATGCCCCTGAAGTTATTCCTGAGGATGTTGCTGCAAGGTAACTCCTTGCTGGAGGCTATGCCTAAGGGCACAGTCTAGTTGTAGGTGTAAATAGAAACCTTTACTATTGCTGGTATATTTCTTCTCCTCTCTTAATGTGTTTGCATAGAGGAAAAAAAGGAAGTGGAACACAATGTCTAAATCACAGCAGTTTAGAAGTGTTCAAAATGTTGCATAACTGAATAATGGTATGCAGACAAATTGGGACATTGAAATAGTTATGTTGTCAGTCACTGATTTTCAAGTCTTTTAATGTAGAATCCTTTTTCAAATTCAGGATATTTAGTACATTCTAAGAAAAATGGGATAAAACGTCTGCAACTGCTTTGCATGCAGTGTCCTACCAGCTGCTGATATATTCTACTATCGATTTTTGGCAAACTACAGATTTTAAGTAGGAGCTCTGCATGCAGAACAAGAGCATCCTGCCACCATTTACTTTACAAGCAGAAAAAAACAGCTTCCCATTAAAAAAACCACATGATCAAGCCTGTGCAGGTCAATTCATATTCATGAAAATAAAGCACATATTGTAAGATACATTACTTTCACTTAAAATTCCACTTTTTTATGTAAGGCCACATATAATTCACACGGGAGAAGGAAAAGTTCTCTGGGGAGTAATAATGAAATAAGGTGAGATTTCACTGTTTTAGTTTGTATTGACAAGAAAGGATAAATGAGTCATTTATTTAAATGCTTTACAACAATAATTTCAGTGCTTAATGTTGGTTTCTAAACAACGCAAAGAACCATTTTCCAGTGAGTAATCCGTTAAAGGATTTTGATCTATGACTGAATTGCAAAATATCATTGTATCCCCTGCAACTCTGATATATGGCAAAGGTGAAGATGTTTTTTTTTTTAATACTGAAGATGATACAGATCATAGAGATTAAAAAAATCGTTACAAGTATGTGAAAGCCTGCTGTAGCACATGGAACAACTACTTGAGCTCTCTTCTGGGGAATCCCAAAACCAAATGCTGACTGGGAGCTCGATCACAACCACTGACTTCTCTTCTGGTTGCTTTGGTAGATATGCTACCCCCCCTTTCACGATCAACTCTCCTCCAGTGCCTCTTGTATGATTCCAACTGACACATAAACTGACCACCCCCACACCCCTGGTGTATTTGAATAGCTAATATTTTCCTACAAGACCCTGTAGAGGAGGAGGAGAGACAGAATTTGGATCTTAGCTCCAGTTCTAAAATCACATTGTTTGTAGTCGCACAGAAATTTCTTTGGCTTTAGAAATATGATCAAATGAGCTGACTTTGCTTCTATTGTGTCTTGATCCCATAGCTTACCCTCAGAATAGTTTTCGACAGTTTTGAGTCAACCTATATTAACATTTTCAGTTAATGATAAAATCATTTTGAATGCTTTGCAGCAGGAATTATTCCATAAAATAGAGACACTAAAGGTTGTGGTTTTGGCTTTCAACTAAATGCTGCTCTAAATGTGTAGCTTTGCTTTCTGTCTCATTATTCTTCATCTTTCCTTCATGAAGCTGGTGGAGGCTGATGCAGAGGAGTCAGTATTCTAACAACACAATATGTCCAAAATGCATGGCATCATGAACTTGATAAAGCACCATTTAATCCAATTAATTTGGTAAATAATGCATTTGTTAAAACTCTTAGGATTTTAGTAATACATAAGTACATGAAAATTTTCAGAAGTTAGTTATTCATCCACCAAGCAAACCCACTCTCTTATATGTAGCAGTCAGTCTGTCACATCAATAAGTGTAGTATTTTTTCAGCTTAGGAACATTTCTTTAATTGTATATGCTAACACAGATAGACTTGTTTTGTATGAACAAGAGGAAAGAGATGGGTAAGTCTGTTTTTAAGAAGATAGCGTGAATTTTTTGACCCACAGAATGAAAAAATTTGTTCAAACCAGGGATGCAGTTTAACATGGTAGTACTTGGGGCACTTAACCTAGAATTTAATGGGGACTCTTTAAAATCAGTTTTCAAAGCAAAACTTTATAGATCATTAATGAACTGAAAATAAGTTGTCAGGTATAGATTTCTTTTGAATCTAGGCATTAACTCAGTTGTTCTCTCATTTTACATATGCATATTCAGTTTCTAAGTAATATCAGATCTAGAGAGAAGTAATGGTTGACTGAGCGTGGAAAAAGGTTCTGTACAGATTCAGTGATCTGTTTGCTGCATCTCAGATACACTGTATGGCAATAGAAAATGGAAGCAGCAAATGGTAGTTCAGCAGAACAAAAACTGCCTTGTAAGCAAGGATGTTTAAAAAGTACCTGTAGAGGAAGCACAATTTTAACATTGTTATTGAAGTCCAGCTCCTCTTCCACTAAGGAAAAAAGTAAAGCATGAAACTACAAAAGTTTTACACATTTTAGGGAATTCATTGCAGTAAATTAACATTACATTTCCATTAAGCTCTATAAACATATGGTTACTAATAAAAGTGTTGAATGTTCTTTACTAACCAACTAACCTGGTCTGTGATTTTTTTTTCCTTCTTTTCTTTTACCTTCCAAATGCATGACCTGTTGTGGGATGCTAGGATGAATCTGACAATCTACATTCTGATGAATTTAAAGCCTGCCTCATCAGTCTAGGACAGGTTGGAAATGACCTGCAGGTAGAGGAAACTGATGTTATTCTGTTTTCAGATAGGTCAATATAATAATTTTCAATTATTAATTTAAGAACCAATGTATACAGCATAATGCTTTGAAAAGATCCTGTGCCTGGGAAGGCAACTGGGTTAGACGAACTCTCTCTCAGCATACCTTGGAGCCACATTTCTCTGACTGTGCATTTCAAACATTTTCCAGGCTGTTTCTTTTCCTTGATAAGAGACAGCTGTGAAGAACTCCTATGCTTTTCGCACCCAGACTTCTGTCCATTTTCCTCTCCTCAGACAGAATATAAGTGCTGTACTGTTCTCTCCTTGTTTAGGATGACACGATTCTTTCTAAACCGCTGTATTACACTGCAAAACAGAGGAGACATTTATTTACCTTATTACTGTCATACAATTTATAAGCCAGGAATGCTGCATATGAGTTACTGCCTTCAAAATTAGCAATCTCCTTTTATTCAGAGTCTTCCAGTTACCTTCTTCTAAGTCTTTTAAGTGTCACCATTTAAGCCAGTGTGTTCATTTCTTTGCTATAGTCCAGGTCTTGATGGCCTGTAGTCAGAAGAAGGAAAATCTCTGTATTTATTTCTCATATATCAGCAGACAGCTTTTATCATGTCCCTTCCTAGCCTTGGAGTGGAGTATTTTAGTCAATGATACATTATTTTCAGACTGTTTTTAACTACACTTATATTTACTACACTATCCCTTGCAGAACCTTCAAAAGACATTGCATATCAGGGAGGCAGTTTGTGCATCTCCTGATTTTTGACTAGCTTAGTAACAAATTTTTCTCCTTGCCTTTCTCTTTGTCTTCTCTGGTTGTGCTCTCCGTATGTTCTCCCTTATCTCTCCCCCGACTTTTCTTAATGTTATTTCTTGTGTTGAAAATGTCTGTTTCCTGTGTGTGATATGTTAGTTACTTCTTCCTTCTCTAAAACTGATGATAATTCTGGTGACCTGCTTGGGCATTGTCAATGAATACTGTTTATACACTGGATCCAATTTCCCAATGGTCTAAACTCATCATCTCTGAAAATGACCGTGGATGCTTCAAACCTTCCCATCTGTATTCCTTATGTTATTTTGGTCAATAG
Seq C2 exon
AGGAAGAACGGACTGATGGACCATGATGATTTCAGAGCTTGCTTGATTTCAATGGGTTATGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463:ENSGALT00000023354:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.8=42.9)
A:
NA
C2:
PF138331=EF-hand_8=PU(37.7=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]