GgaEX0021204 @ galGal4
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36952174-36959184:-
Coord C1 exon
chr3:36959038-36959184
Coord A exon
chr3:36953275-36953340
Coord C2 exon
chr3:36952174-36952332
Length
66 bp
Sequences
Splice sites
3' ss Seq
TATGTTATTTTGGTCAATAGAGG
3' ss Score
4.34
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
CATATCCGTGTTGGATGGGAGCTCCTACTTACTACCATTGCTCGAACTATCAATGAGGTTGAGACTCAGATCCTCACAAGAGATGCCAAGGGTATCACCCAGGAGCAAATGAATGACTTCAGAGCATCATTCAATCATTTTGACAGG
Seq A exon
AGGAAGAACGGACTGATGGACCATGATGATTTCAGAGCTTGCTTGATTTCAATGGGTTATGATTTG
Seq C2 exon
GGTGAAGCTGAGTTTGCTAGAATCATGTCCTTGGTTGACCCCAATGGACAAGGAACCGTCACTTTCCAGTCCTTCATTGACTTCATGACCAGAGAAACAGCAGATACGGACACGGCTGAGCAAGTGATAGCTTCCTTCAGAATCCTGGCTTCAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.010 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.8=42.9)
A:
PF138331=EF-hand_8=PU(37.7=90.9)
C2:
PF138331=EF-hand_8=PD(58.5=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGATGGGAGCTCCTACT
R:
TGGGGTCAACCAAGGACATGA
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]