BtaEX0002290 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009696 | ACTN2
Description
Bos taurus actinin, alpha 2 (ACTN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034635]
Coordinates
chr28:9443121-9449192:+
Coord C1 exon
chr28:9443121-9443267
Coord A exon
chr28:9445144-9445209
Coord C2 exon
chr28:9449034-9449192
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTTTTGTTGAAAGAGG
3' ss Score
2.86
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CACATTCGTGTGGGCTGGGAGCTGCTGCTGACGACTATCGCCAGAACCATCAACGAAGTGGAGACCCAGATCCTGACGAGAGATGCGAAGGGCATCACCCAGGAGCAGATGAATGAGTTCAGAGCCTCCTTCAACCACTTCGACAGG
Seq A exon
AGGAAGAATGGTCTAATGGATCATGAGGATTTCAGAGCCTGCCTGATCTCCATGGGTTATGACCTG
Seq C2 exon
GGTGAAGCTGAGTTTGCCCGCATCATGACCCTGGTGGATCCCAACGGGCAGGGCACCGTCACCTTCCAGTCTTTCATCGACTTCATGACCAGAGAGACGGCTGATACCGACACGGCCGAGCAGGTCATCGCGTCCTTCCGGATCCTGGCTTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009696_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF138331=EF-hand_8=PU(15.4=20.4)
A:
PF138331=EF-hand_8=FE(32.3=100)
C2:
PF138331=EF-hand_8=PD(47.7=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTTCAACCACTTCGAC
R:
CTTGTCAGAAGCCAGGATCCG
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development