RnoEX0006350 @ rn6
Exon Skipping
Gene
ENSRNOG00000017833 | Actn2
Description
actinin alpha 2 [Source:RGD Symbol;Acc:1308097]
Coordinates
chr17:66305805-66309970:-
Coord C1 exon
chr17:66309824-66309970
Coord A exon
chr17:66307443-66307508
Coord C2 exon
chr17:66305805-66305963
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTTCTCTCTTTGTTCTTTAGAGG
3' ss Score
8.58
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
CATATCCGTGTCGGATGGGAGTTGCTGCTCACAACTATCGCCAGAACCATCAATGAGGTGGAGACCCAGATCCTGACAAGAGATGCCAAGGGCATCACCCAGGAGCAGATGAATGAGTTCAGAGCCTCCTTCAACCACTTTGACAGG
Seq A exon
AGGAAGAATGGCCTGATGGATCATGAGGATTTCAGAGCCTGCCTCATTTCCATGGGCTATGACTTG
Seq C2 exon
GGTGAAGCTGAGTTTGCCCGAATTATGACTCTGGTTGACCCCAACGGACAAGGCACGGTCACCTTCCAGTCCTTCATTGACTTCATGACTAGAGAGACCGCAGACACGGACACTGCAGAACAGGTCATCGCCTCCTTCCGGATTCTGGCTTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017833-'29-32,'29-31,31-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF138331=EF-hand_8=PU(15.4=20.4)
A:
PF138331=EF-hand_8=FE(32.3=100)
C2:
PF138331=EF-hand_8=PD(47.7=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCCTCCTTCAACCACT
R:
GAAGGAGGCGATGACCTGTTC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]