MmuEX6057249 @ mm10
Exon Skipping
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12270778-12275224:-
Coord C1 exon
chr13:12275078-12275224
Coord A exon
chr13:12272699-12272764
Coord C2 exon
chr13:12270778-12270936
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTGCGTTTGCACAGAGG
3' ss Score
7.4
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
CATATCCGTGTCGGATGGGAGTTGCTGCTGACAACTATCGCCAGAACCATCAATGAGGTGGAGACCCAGATCCTGACAAGAGATGCCAAGGGCATCACCCAGGAGCAGATGAATGAGTTCAGAGCCTCCTTCAACCACTTTGACAGG
Seq A exon
AGGAAGAACGGCCTGATGGATCATGAGGATTTCAGAGCCTGCCTCATTTCCATGGGCTATGACTTG
Seq C2 exon
GGTGAAGCTGAATTTGCCCGCATTATGACTTTGGTTGACCCCAACGGACAAGGCACGGTCACCTTCCAGTCCTTCATTGACTTCATGACTAGAGAGACCGCAGACACCGACACGGCAGAGCAGGTCATCGCCTCCTTCCGGATTCTGGCTTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374-'37-29,'37-27,42-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF138331=EF-hand_8=PU(15.4=20.4)
A:
PF138331=EF-hand_8=FE(32.3=100)
C2:
PF138331=EF-hand_8=PD(47.7=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGAGTTGCTGCTGACAA
R:
ACCAAAGTCATAATGCGGGCA
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types