GgaINT0081925 @ galGal4
Intron Retention
Gene
ENSGALG00000015001 | LAMA4
Description
laminin, alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
Coordinates
chr3:65181296-65183709:+
Coord C1 exon
chr3:65181296-65181444
Coord A exon
chr3:65181445-65183567
Coord C2 exon
chr3:65183568-65183709
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAA
5' ss Score
6
3' ss Seq
GTTTACTCTCTTTTTAACAGGAA
3' ss Score
10.25
Exon sequences
Seq C1 exon
AATGTGTCAGGGTTCTACGCAGAAATAGATGGAGCAAAAAAGGAATTGCAAGAAAAAATAGCCAATCTGTCTCTGTTTGATGATGAGCTGGAAGAAAAGGCTATGCAGCATGCACATAACCTAAGAAGACTTGCTGATGAGTTGGACCG
Seq A exon
GTAAAATTTAACTTCAGCAGACTCTGTTCATACAAGTGTTAATTATTGATCAGCTGAATGAACTGAAACAAGCAGAAACACAGTGACATTAGATATACTGGCTGTAAATGAGCATCAAACAAATTGCTGGGAACTCATGTATGGAAAGAACTTTCATGGTCCAGAGGGAAAATCTGAAGTTGAGCAAAGCAAGATCTATTCATCTTCTCAGAGCATAAACAAACGTATCTTGTGTGATATTCTTCCCTTTATAATTTGGCACATTCTTCTCTTGCCATAGCATGAGAATAGAAAAGGCAAACTACTGAAAAGTAATACAGTACAGGCAGATTAAATGGGGCTGGCAGATACTGCTTTTGTCAGTGAGTTATTTCACATTAAAAAATGTTTTTGCAGTATGGGCCATAAAATGGGATTTGTGATAATTTTTGTTTAAGAATTGGTTTACGGATGGAATAGTTCTTAAAGTGTAGATTGTGCCTCAGTGAAAGAAGCCCTCTGTAATACCAAAAATTTACTGCAAGGCCTGTTTTGCTGGAAGACTATATACACACAAACGTTCCTTCAGTTTACTAAAAAAGTCACTCTAAGCAAATTTGAAATATGACTTAATTTGCAATTGGTACTACACATGAAAAAATCACTGCTGCAAGTGATTTCTTAAAGAAAATGCTTCACCAAATTCTACCTTAAGTAACGTAACAGACATATGTCTTCAGAGGATAAAGTGTTATAACTACTTATCAAGCACATTATCTAAATACCAGTTGTTTCTTAATATTAGTGTGCACTGGATGGGAGATTTGAATAGTGAAAAAATAACAGATGGCTTTCCTTTATAAAACTGTACAAAGCTGATATCTGAAACTCTTGTTCTATAATGCTACACAAACTACAGACAACCTAGAAAGCAAACAATATGTTCAGTCTGAGATTGCCTAGCTGGGGATAGTAGAATCACTTGAAAGAGAATACCCCATATGGCTAGCCTTCATCCTTTCCTAAAATAATTTTAAAATGACTACCAATTCCAACATATCAGGAATTTAATATAAAATGAGCAGAAATAATTGCAAAATATCCAGATGGAAATGTGCTGACTCTTTTATTCTTTGAGAAGATTGTCCTTCAGTGAAACTTTAATCCTTTAAAACATTTAGCCTATCTTGAAATCATTTTGTTGTTTGGTTGGTTCAAATCATTATGTTGTTTGGTTGGTTGGTTGTTTTTTGTTGTTGTTGTTGCCTGTTTTTTAATGGGTTTGCTTTATAAACTTGTTAGGCTTTTTTCATTGTTGTAGTTTTTTGGGGGGAATATAGCAGAAAATACAACAGTCCTGGTAATTGGAAAATTATTATGTCTTCAGTGTGCAAATACATTGAAGTGAATACACACAAGCAGATATAAATGTGTATCTAATATTTATATAAATATATTCTCTGATTTGTGTTTATCACAAAAATATAGAAAATAATGCTTACTCAAAGTTATTAACTGTTGAAGGTTCAGCCCTAAGCCAATTGCTTTGAATCTCCTCTGAAGACCATTTACCACCTAATATGCACATCAAGCTCTACCATGCCAGCAAGGCAACATTATATTTCTGAAATCAAACTTCTTGCAAAATTTCATGACCAGTGGATAGTTCTTGATCTAACTCTCCCCCTTTCACATCTACATTTTGGAACATAGAAACAGTCTGGTGATACAGCTCTCCTGATCACTGGCACACACGGTTCTTTCCATTCACAGCCAGGAGTTAACTCCACAGAAGGACAACCCATTGGTCTGTTATTCTGCCCATTTATGAAATATCTATCCAGATTTTTTAAAAAGATAAAAGCTTAGAAATTACTTGTTACTGCTCACATAGACGTGAAGGCCAAATTCCCAGAGCTTTATCAAGTTGGAAACCCTTGGGATGTACCTGCTATCCACATAGTTTTCTCCTGCTTTAGATTGGCATGGATGGTCATACCCAATGAAGAGAATATACGTCAGACCAAATATATTTATGTGCAAAATTATATAGTCAAGATTCATAGAATGTTAAGAAAGCTAATCAATTTGAAACTAATTTGATGCAGTTTGGTTTCTTCCTCTGTTTACTCTCTTTTTAACAG
Seq C2 exon
GAATTTACATGGTGTTGATACAAATGGATTGGTACAAAGGGCAATAAATGCTTCAAATGTATATGAAAATATTGCCGGTTATATTGAAGAAGCTAATAAAGCTGCTTTGCTGGCACTGAACACAACAAATCGGGTCAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015001:ENSGALT00000024193:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]