MmuINT0089514 @ mm10
Intron Retention
Gene
ENSMUSG00000019846 | Lama4
Description
laminin, alpha 4 [Source:MGI Symbol;Acc:MGI:109321]
Coordinates
chr10:39056777-39060268:+
Coord C1 exon
chr10:39056777-39056925
Coord A exon
chr10:39056926-39060126
Coord C2 exon
chr10:39060127-39060268
Length
3201 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ACAAAATTGTTTATTGGCAGAAA
3' ss Score
4.77
Exon sequences
Seq C1 exon
AATGCATCTGGAATTTATGCAGAAATAGATGGAGCCAAAAATGAGCTGCAAGGAAAACTATCCAACCTGAGTAACCTCAGTCATGACTTGGTTCAGGAAGCTACGGACCATGCATACAATCTTCAACAGGAAGCCGATGAGCTAAGCAG
Seq A exon
GTAACATCGAAGTTTTAGAAATGCAAACATTTACATGGACCAAGTGGGACATCTGTATTCAGCTCCATACCAGAGTCACTAGGATGCAGCAACTAGGTTGTGCTTGGCTTTGCTTGATTGCTAATTGGTTTGTTAATTGTTCTCTCAGAGCCAGTCATCAGTTTTTTGCAATTGTTTCTGGAAGACTGTCCTTTAAAAGTCTTTGAGACTAGAAACCTGTGCTCTAGGCAAGGGTGCAAATGAGATCTGTTCCACAATAAGGTGACTGGGGCAAGAAATTAAATCCCTCCACAGTATCTAATTCAACCATCATTACCTGCTTATTTTATAGCCAGCATTTACTTTCCACACCCAAATACCATAAGTCAAGCTGGTTAGGAGTTAGCATTACAACTGATTCCTGCTAAACACTCAACTTTCTGCAGTGCCCGGCAGGAAATGTTTAATTTAACTCCTGTTAAGAGAAAAAAAACAATCAATTGACAATTTCTTTCACAGCACCTAGAAAAGAGTCACACACCCTTTGGCCACTTATTTAATGTTAATTGAAACGTACCAAAAGATTGGAATTGAATTCATGACCCTGAAATCAGTAAATCATGAGATCATTATAGAAAGCAGGCACCTGGAAAGGTCAAGGGTAAGGGCCAAGATTAACATCCATTCTAAATGCACAGCATCCTTAAAACCTCCTCACCAAAAATTTCAAACATCACTCCTGACTGAGTAGGGGGCTGGGGGTGGCTTAAGGAATAAGAGAGGGGAAAGAAGGGAGAAAAAGAGGGAAAAGGTGAAGGGGAGAGGAGGGAAAGCAGAAGAAAGAATAGAGGAGACAGAAAGCATGAAAGCTTATAGCAATGGCAGCTCTGGTGTGGTACAGTATTGTATTCAGTGTGGTGTTGTATGTTGGTGTAAGAATTATGCTTTGAATGAAAGCAATAAAAGGAACTTAGATAAAACATCAGTTTTGATGACATCGCAGATTGGTTGATTATTAGTTTTGTGCCACCCTCTGGCTCTCTCTCTCTCACCATTCCTTCATCTTTACAGCACCCTACTGGTGGATACAGAGGGCACTCTTCTCTAAATGTCATTCTGCAGTGGTGGTCCAGCAGGGTTCCGTGGAAGTTACTGCGTGTTTTATTGGCTCCATAGGCACAAATGTCAATCAACCTGACATCATCTGTTTCTGACTCAATCTATTCATAAAAACATTCAAAATTTATAAACTTTCACCCTCAAAATGTAAACATTGAAAATTCCTCAACATTTATCTGGTGTACACACTTTTTTTCTTTTATCTCTTTTTGTTGGGTAGGGAGCTTGTTTTGTTTTGGTTTTGGTTTTGTTTTGTTTTGTTTTGTTACAAAGTCTCTTATAACTTAGACTGGCTTCCAACTCTATATAGCCACAATCGACATTAAATTTCTAGTCCTCCTGCCTTTCCCTCCCAAGGCCTGGGATTACAAGTGTGTACTGCTGTGCTGTTGTGTGCATTGTTGGGGATCAAACCCAGGCTTTGTGCATCCTAGGTGCTATGTATTTGTTTGTTTGGATTTCTTGGACAAGATCTTAGAGTCTTACTCTTCAGCCTAGGCTGGTTTGAAACTCATGGCAATCCAGCTACCTTTGTTTTCTAAATGCTGAGATTACAGGCATGATATAATTTTTTCTTGTCTACCTTCTTTATAGTTTACTCGTGATGCTATTTCTAGGAAGAGGTCCAAGGGAGGGAAGATAAAGAGTATATGGAAGAGACAGACCTTCATGTAGCATGACTCTTACCATGATTGATCCTTTTCTCTATCAAAATCAAGCTCTGTTTCATGGCTACAACAAAATGAAGACAATATCATTTTATTATCTTCATTCTTTTCATTTTGATTTGAAAAAAACTAAAATGATCTATTTTTGTGGATTCTTACTCTGTCCATTGGGCAAGTCAGGCCTGCTACAGGGGAGATTGGCTGATGATGGAGTTAAACGATGAGAGAAGTAGCTGGGAAATTGGAGAGGAAGTTGTTCAGCCTAGGAGCAAACTGGGTCTGGGCTAGATGGTGCAGGCTAAGGAAGAGTTGACTGTGCTCATCAGTGCTTTTCACACTAGGTAGGATCTGCAGTGTCCAATAATCTAAGCAGAGACAATCATAGTATGCAGGGTATTGGTGAAGAAAGTGATATTAGCTGTAAGTGTTTGGAATTCAAAGAAAATAAGGAGCTACTGAACCTGAGAATCAGTAAAAGAGAGGAGTTAGGATGAGCTGTGAAGGTGAGAGTGGTGTTTACATGATAGACGATTAGAAAGTGTTGGTTAGCCAGGCATAGTGGGTCAGACCTTTAATCTTAGCACACAGGCAACAGAGGCAGGCTGAGTTCAAGGCCAGCCTCATCTACATAGTGAGTTCCAGAACAACCAGGGCTATGTATGTCTCAAATAGAGGGAGAGGGGAATTATTGGTCAGAAAAGTAAATGTTATAATATATTTTGTAAGTCCAGTTCAGAAATGGTTTAAGTATAACTATAAACCCTGAAGTTCAGGAGATGCAGGCACAGAATGTCAGCCATATACCCCGTTGGTCCTTGCTATGCCTGTGTGAATCCTTAGAAGATATATGGTTATTCTCCTCAGTATGTGAGAACATGTATGTGATAGGTTCTCAGTGAGTGTTCCCTGAACCCTACTCAAACTTGGAAGGGATAATGCAGAGAACATGGTGTTTCAGGACAGAGGGGAGGCTAGCCTGAGCTGCAGCTGCCAGAGAATCAGACCGACCTTAGCCCACCACTGTGTGCCCTCCCCGGGGCTGGCGTTCAAGAGTGGCAGCTGGGTCCCATGTAGGTAGCAGCATATGGCTTCAGGCCTTTGTCCAACCTGCACCACTTAAATAAACCTTTGCAAAGAGGGACAGGGGGCTCTTAAAATCACCATTCTTATTTTTAGCAGCTACTGACAAGCAACAGCTATCATGAGTCAAAAGGAGATGACACCTTCAGGGCAGGGCAGAAAAATGAATGTGATCGTAATGTGTCCCCAGGAAGGGAGACTCATGAAAACCTTCCAACACAGGTGGCTTTGAAAAACAAAAACAAAAATGGGAAGGCAGCTTCTGTGATCCCTGAAGTACCAAAATGAAATCCTAAGTGTGGCCCCATTTCCTATGGAAGTAAGAAGGAGAAGTAACAAAATTGTTTATTGGCAG
Seq C2 exon
AAATTTGCACAGTTCAGACATGAACGGGCTGGTACAGAAGGCTTTGGATGCATCAAACGTCTATGAAAATATCGCCAATTATGTCAGTGAAGCCAACGAAACAGCAGAACTTGCTCTGAATATCACTGATCGAATTTATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019846:ENSMUST00000019992:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.380 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types