GgaINT0082227 @ galGal4
Intron Retention
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15774363-15777364:-
Coord C1 exon
chr3:15777293-15777364
Coord A exon
chr3:15774795-15777292
Coord C2 exon
chr3:15774363-15774794
Length
2498 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ACCTCTGATTGTTCCTGCAGATT
3' ss Score
11.31
Exon sequences
Seq C1 exon
GCAACAGCTGAGGCAAACAATCTTGCTGCTGTGGCAGGAGCAAAAGACTTGTACAGTAAAGGCATGGAGCAG
Seq A exon
GTATGGTAAACTTTTTCTAACTGAATGTAAATCCAGGCCTTCTGTTTTAGCGTTGTTTGGTGTAGGTTAGGAGTGTGTTAATGGGGGGGGGGGGGGGGAAGTATCTTAGCCAGGATTAGTGTGCTGTCGGTTTCTTGCACTGAGGCTAGGTGTCTGATGCAGTGTATCTGGGATTCTTTGAGATAGGAATTGGTGGGGAGGTGTGGGAATGGGATTTCATAAGAAACCACCTGCAGATTCCTGCTGCTGCTCCTGACACATCTTAAGGATCTTGTAACATGAAATGGATGGGTAAGTGAGGAGAAGTGGTGTGTCGGGGCACATCTGAGGGTAGAGTTCTAGTGTAGTTTCACAGTTCTGAGTAGCGATTGTCTATTAGCTGTCAAATGTGTGGATTAAAATCCTTTTAAGCGAACCCTTGAAATATCAAAACTATGTATGCAATTTCCTACTTGCTTTTTCTCGTGAACTTAGTAACTTACAGGTGGACTCCATAGTGTTACACAAGGTTTTTATCACAGCAAATTCTGAAAGGAGTTGCATGTCTTAAAGCTTAATGAGACTGTGCTTATTAGGAAACTTTAAATCGGGAGTAAACCAGTGGGTGTGATAACGTGCTACGAGCATAGCTCCCCACTAAGCAGGCAAATGCTGGTCTTAATCACTGAAGTAGCTTTCTGTTTTGAAGTTAGAATAAGACCTAGTGCTAGTGGCAGGGTAGGCAGTTTTAGCAGTTAGCAGGCTGAGCTGAGAATGCTGATGTAGAGGGACTCCTTCATTTGTTTCCTTTTTTGGAATATCTCTTGAAATAATTTATGTGTTGTGTATAAGAAGGAAAGAAAAAAAAGCCCAGTCGGTTTTCCTGTCTTGACATTTTATTGGCTACTAAGATACCATGGTTGTAAGACTTCTTACTTGGAGCAAGGAATAAACAGAAACGAATGTTCTCCTAAACAGACTTGTGTTTCCATAGTAATTTCCATCAGTATTGTATATTTTTATATTGCTGTAGAGATAAAGCACAAATATCTTAAATCAGTTTTTATGCAGAAGTCCCAAGTGCTCTTAATGTGACACAGCTTTGAAACTTCTGTTTTCAGGAACGAGACTTAAGACTGGATTATGTATGGGTATTTCTTACCATAGTGCCTTGAGCTCTCCTCACGAGCCAAACCCCTTTTTTTCTGAGTATGCATGAACACTCTCCCCTTAATGACCTGAAATGGAAGGAATAACAAGTATAGGCACACGGAGCATAAGAGAACAGTGGCAGTATTTGTGTGGCAAGCAGTGGTTTTAGTGCATAAGGAGCTCCTCGTATTATAGTTCTCTGGGGAATGTGAAGAGACTGTTTTGGAAAATGAGATATTAGTAACTTTTCCAGGGAGCTTTCCAGCTATGGAGAACTGTAATAAAGAAAAGGCAGAAAGGTGCTTATTGAACTTGAGCAAGGGACAGCAGATAGGGTGATGGTGTCAGGATTTTGACAGTGAGATTTGCTTTGAAGAAGCCAGCCATACATCTTGTGAGGCAGAAAGGATATGCTGCACTCTGAGAAAGTGATCTTTTCTATGTCCAGCTGAAGGAACAGCAGCAGGAGAAAGTTCAAGTTGTGTTTGAAGAATGATATGATGAGCACTGTGATAAGTCTGCCTTGTGGCAGAGGAGGAAGGCTGTAGTTTAAGGTCATATGGAAAGAATCTTCAGTCTTAGGACACAGTCTGACTGTAAGGGACTCAGGGAGTCAGAACTGATCTTAGCAGTTTAGGTCTGTGTCTTAGGTACTTAAGAGTGTAACTGTTTTCATACTCATGCTTATTTAGGGAGAGGAAGATGATGGGTGTCCTCATCACAGGTATCCATCTGAGTCGGTGCTCTCTTCCCTTCAGCAGAAACTTGCTCTCTCAAGTTGATCTGAATCAACTGTCCTAGAGGACAGTCTAGGGAAGAACAGGCTAAAGATGCTGTCAGCAGCTAGTTCTTGTTAATTCGTATCACCTGGTAAGTTCTCTGGAGCCTGCGAGTGGCAGCAATAAACAAGAAGTTACTGAGTGGGCAAAATCCACCGTTTGTCCAAATTCATTACTGAACCTCTCATTGGGGTGGGTGGTCTGAAGTAAGAAGCTGAGGGGAGGGCTTCAGAGTGCTATTAAACCTTTCTCTGCTTCTGGATGTTTCTTGTTTTGCCTCTTCATAACAGGAAATTGCATTATAATTGATGTCCTCTCCTTCTGGTCCTGCCTGAGGGGGGAGTACTGAAAGTATTCTGTCTTGTGCTGTGGCTTTGTATGTGATCAGACAGTTTAGGCATTTGCTGATCCATGATGCAGAGTACTTCTAGCTGATTCCCTTGGGATGGGACTCCAGACCTTACAGAGCCACGAAAATTGCAGGAGTCAGTCTGATACTGGTTTGAGGGGTAAGCAGCAAGGAGCAGGTTTGCTTTCTGTACAGGACAGGATGCTTTGTGCTGACACCACCTCTGATTGTTCCTGCAG
Seq C2 exon
ATTTGTGGAGGAGATAAGCCTTATATTGCCCCATCGGACCTTGAGCGAAAGCACCAGGATTTCAAAGAGTCAGCTGTCAAGCAGTTCTGCTCTGTGAAGAAGATGGGAGGGGAGGAGTTCTGTCGGCGCTACCAGGAACAGCTTGAGGCAGAAATCGACGAGATCTATGCAAACTTTGTGAAGCACAATGATGGCAAAAACATATTTTACGCTGCTCGTACCCCTGCCACTCTATTTGCAGTCATGTTTGCCATGTATATAATCTCAGGACTGACTGGGTTCCTTGGTATGAACTCCATAGCTACCCTGTGTAATCTCGTGCTGGGGATGGCTCTTATATCCTTTTGTACTTGGGCATACGTTAAGTACTCTGGGGAATTCAGAGAAGTTGGAACAGCCATCGATCAGATCGCTGAAGCTATATGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515:ENSGALT00000013868:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(17.8=100)
A:
NA
C2:
PF028419=GBP_C=PD(54.3=48.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]