GgaINT0083131 @ galGal4
Intron Retention
Gene
ENSGALG00000011537 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr3:42603977-42606583:+
Coord C1 exon
chr3:42603977-42604060
Coord A exon
chr3:42604061-42606432
Coord C2 exon
chr3:42606433-42606583
Length
2372 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGA
5' ss Score
6.69
3' ss Seq
CCAAACTGATTTCTTTCTAGCTT
3' ss Score
6.04
Exon sequences
Seq C1 exon
ATACCACTTTGACATCAGTCCGCATGAGGATGTCTGGCCTGCCATTTTTGTCTACATGGTTCACCAGTCCTGTGGGACAGCCTG
Seq A exon
GTATGAACTATATGATTTATTGCTTTAACTCCATTACTTATGGTTTTATTTATTTTTAAATGTTAAGTTCATTATTTTCTAATGCAGCATCTTAAACTCCTTTGGAGTTTATTTGCATTGCCTGATCTGTACCAGGCTGTCAAAAGCAGACTAAACTTCTTGCCCTAACTTGGTCTCTAATTCGTAGTATTTGTGAAGAGCAAGATGAAAGAACTCACGATATTGTCTGAACAGTTGTCCTTCCTATATGTAGAAGTATTGTTTGGTTCTGAGGTGATATCGGTTTTTTTGCTTTTCAGTCTGAGGATTGTGAAGATATTAAAGGCACTCTTGTTAAAATCAATTATCAGCATAATTGTGCATTAATTATGGAAGTGAGCAATTTTGGAATTAAAAGTCATTTCATTTACTATCCTTTCTTTCAGTATCTGTTACCATTGCCAACATCAGCAGTCTCTTGACCAAGTGTACTCCCATTGCTTAGAGAAAGGAACTTCATGAAATTGTGGAAAAAAATTATAAATGGGCAATTGAGAAGGGAAATATGTTCCTGCAAAACTGAGGAATGTTTGGGAAGCGTTTATTGGTGGCTGTTTCATCTTAATAACTAGATGAATTTCCATGCCCTCAGAACATAAATATAGTCAAATCTGAGGGTCTTTCTCTTCTTCTCTTCAATACTGCGAAGTGGATGATTGGTCCAAATATAGTTCTGTACTGCTCAATGTAATTAGGTTATTTCCATTCCTGAAAGAATGGCTGGGATTCAAGATTTGGGTTCATGTTTTCATTTCTATTTTTTGCCTCTATCATTATTGCTTTTTCAAGGTCAAGGGAAAGAATTGTTATTTACTTGACATTTTTCAAATTAGTCTCAACTCTCACATACAAAATTAAAGAAACAAAAGTGTGAAAAACATTTGAAGATGAGGCTGTTGGGACTGACAGACTTGTATTTAATTTCTGAAGGAACAAATAATCTCAGCTCTCCAAAAAGGACACCAAGAACTTTGCAGCTGTTTTAAGACTAAAACTTGATTTTAATTATATTGAGGAGATTGTGCCTTTAAGTATACACCTGTGTAATCTGTAACTGTCTTGCACAGGGAGGATTTTTTAAGAAAAATTGTTGATACTCATTACAATTTCTGTTCTCTCATGAAACAATAATCTTTTACTGCTTTAATCATCCATACAAAATGTCATCTTGGGGGAACTAGTAGTATTCTACATTGAGGTAACATTGGTAATGATTTTCTCTTTGGCTTCAGTTGTTACTATTGAATTGATATTGGATAGATATTGTATACAGTTGAAAGCAACTAGAGTGATTTTCTGAGTTATGATGCAGTATTTAAAGTAGAAGTTTTAACAATAACTTCAGAGGTGTCTGGCTTAACTTTCTAGAATTAAAAATAAACTCTAAAGCTATTTTTGAAACAGTATGCCTCCCTTTTTACTAATATCATATTAAGTCTAAAGCAGAAGAATAATTACCTTTCTCAGCATGCAACCATAGAAATATATTTTCTCTGACTAGGTCTGTATAGTAAATTTTTGTTCACCTTTTTACATGATAAATTAGAGATATCCAGCTTTCCTTTATCAGCTCACATATACTGCAAAACTAGGACATTAATACTGCTTCCATGAGTTATACAAGAAATAATAAAAACATAAATCTGTAAAGAAAAAGAATTCTTTCCTTTCAAATGCTGTGTAGAGCTCGGATACTATGGGATATAACTCTTGGAAGTGTTCTTAAGCCACATAAGCCAAGCATAACAATTATTTCTTAACTACTTTGTAACATTACTTTAATGAAAATACTTTTGATTTTGCTTGCATATATTAATAGCAAGAAGACACAAAAAAATCCTTTAAAATGATATCATTTCATGAAAATGGAGAAACACTGAAATGATTTTTTTTCCATTATGTCATTATTGAGAATCTTAATATCTGTTATTCAAAACAATTTTTGTGTTGTCATTTAACTGAAATGTTGTTTTAAACAAGATTATTTCTTCAGTGGTTTTGCATAGAATTTTCTAGTTTTATGTTTTGAAAATATTTTACTTTCAAATTATGAATTAGATTATAAAAAATAAATTATAAAGAAAAACTACTTGAAGTTTTTGTAAGTTTATGTAATTGTTTTGCATGAGCTGGATACTTTGTGTGCCAGAACTTTACAAACTGAACTGTGAGTTTTGTCAAGCATTTGCAGAGTTTTGTCCTTACCAAAACTTGAATACTCTCATAATCATTTATTCCTAGCAAGGAATAAATGCAAGAACATCTTTTCCTCCCCTGTTTCATATTTTTTCCTTTCTTATTTCTCATCTCTCACCAAACTGATTTCTTTCTAG
Seq C2 exon
CTTTGAACTTGAAAAGCTATGCCGATTTACTATGTCTGTAAAGAAGAACTATCGTCGTGTGCCCTACCACAACTGGAAGCATGCAGTTACAGTTGCACATTGCATGTATGCCATACTTCAGAACAACCAGGGGCTTTTCACTGATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537:ENSGALT00000018810:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0023314=PDEase_I=PU(11.9=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]