GgaINT0083455 @ galGal3
Intron Retention
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111601736-111602238:+
Coord C1 exon
chr3:111601736-111601920
Coord A exon
chr3:111601921-111602096
Coord C2 exon
chr3:111602097-111602238
Length
176 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCCACTGTCTCATTCTGCAGGGA
3' ss Score
10.88
Exon sequences
Seq C1 exon
GAAAGGTCCAAGAAGAGATAGAGCAAGTGATCGGGTCAAACCCCCCACGCATTGAGCATCGAACTCAAATGCCATATACAGATGCTGTTATCCATGAAGTTCAGCGGTTTGCTAATATCCTGCCATTGGATTTGCCTCATGAGACTGCTGAAGATGTCACTCTCAAAGACTATTTCATTCCCAAG
Seq A exon
GTGAGGTGCTCGTGGGATTGTTTCTGTTAGCGTTTCTCCAATCTCAACGCTGGTAAATGTGAGGTACCTGAATGCTTTTGTGAAGCCACACAATGGCAGTCAGAATAATTTTTTTATTGCCATTACCTCCACGGAAATATCTGACCACAGAATACCTCCACTGTCTCATTCTGCAG
Seq C2 exon
GGAACCTACATCATCCCCTTGCTGACCTCTGTCCTGCGAGACAAATCCCAGTGGGAGAAACCAGACATGTTCTATCCTGAACACTTCCTTGATTCCAAGGGAAAGTTCGTGAAGAAGGATGCTTTCATGCCATTTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCATTGAGCATCGAACTCA
R:
TCTTCACGAACTTTCCCTTGGA
Band lengths:
254-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]