BtaINT0046166 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003871 | CYP2B6
Description
cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:2615]
Coordinates
chr18:50569441-50569942:-
Coord C1 exon
chr18:50569755-50569942
Coord A exon
chr18:50569583-50569754
Coord C2 exon
chr18:50569441-50569582
Length
172 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
ATCTTGTGACCCTCCCTCAGGGC
3' ss Score
8.05
Exon sequences
Seq C1 exon
AGAGAATCCAAAAGGAGATTGACCAGGTGATTGGCTCATATCGCCCTCCAGCCCTGGATGACAGAGCCCAAATGCCATACACGGACGCAGTCATCCATGAGATTCAGAGATTTGCGGACCTCATCCCCATTGGTGTGCCCCACATGGTCACTAAAGATACTCATTTCCGAGGGTACATCCTTCCCAAG
Seq A exon
GTATAGCACCTCACTGGGCTCCCATCTCTACCTTGTGTGGGTCTCCTGGGTTCTCCTTCATCTGCCAACATTGACCTCTTTTTGGTTTTATCACTCACCCTTGGTTCATTATGTGTAGGGGTGGGTTGGGGAGGAAATGGCGATATCTTTCAATCTTGTGACCCTCCCTCAG
Seq C2 exon
GGCACAGAAGTCTATCCCGTCCTGAGCTCTGCTCTTCATGAATCGTGTTACTTTGAGAAACCAGATGACTTCAACCCTGACCACTTTCTGGATGCCAACGGGGTAGTGAAGAAAAATGATGCTTTTATGCCCTTCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003871:ENSBTAT00000043951:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.1=100)
A:
NA
C2:
PF0006717=p450=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACAGAGCCCAAATGCCA
R:
CTTCACTACCCCGTTGGCATC
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development