MmuINT0044812 @ mm9
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:27551760-27552264:+
Coord C1 exon
chr7:27551760-27551947
Coord A exon
chr7:27551948-27552122
Coord C2 exon
chr7:27552123-27552264
Length
175 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TATCTTGTAATGTCTCCTAGAAC
3' ss Score
7.46
Exon sequences
Seq C1 exon
AGAAAGTCCAAAAGGAGATTGATCAGGTGATCGGCTCACACCGGCTACCGACTCTTGATGATAGAACCAAAATGCCATACACTGATGCAGTCATCCATGAGATTCAGAGATTTACAGATCTTGCTCCGATTGGTCTACCACACAAAGTCACCAAAGACACACTGTTCCGAGGATACCTGATCCCCAAG
Seq A exon
GTGAGATCAGCTGCCATTCCTCATTGCTATTCCATCCATAAACATACTCAACTCTGCTAATCACCAAACTCATCCTGTCTGTGATTTCCCAGCATTCTGTGTTTCTTAGGAATTGGCTATTTTGCATATGGAGTCGGGGTATGTTAACATCTATGTATCTTGTAATGTCTCCTAG
Seq C2 exon
AACACTGAGGTGTACCCCATCCTGAGTTCAGCTCTTCATGACCCACGGTACTTTGAACAACCAGACAGCTTCAATCCTGAGCACTTCCTGGATGCCAATGGGGCACTGAAGACAAATGAAGCTTTCATGCCCTTCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704-Cyp2b19:NM_007814:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATACACTGATGCAGTCA
R:
TGTGGAGAAGGGCATGAAAGC
Band lengths:
257-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: