GgaINT0016198 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:2262271-2262855:-
Coord C1 exon
chr14:2262671-2262855
Coord A exon
chr14:2262413-2262670
Coord C2 exon
chr14:2262271-2262412
Length
258 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TGAACACAGCTGTGTTGTAGGGA
3' ss Score
1.69
Exon sequences
Seq C1 exon
AAAAGGTGCATGCAGAGATTGAGCGCGTTCTTGGCCCTGACTGCCCGCCTACCTTTGAGGACCGGAAAAACATGCCCTTCACCAACGCGGTCATCCACGAGGTGCAGAGATTTGTCACCCTTCTGCCGCATGTTCCACGGTGCACCTCTGCTGACACTCGTTTTAAAGGCTATTTCATACCCAAG
Seq A exon
GTACGTGCTGCTCTGCAGCCCACGAGCGGGTGGTAGCACACAGGGCAAAATGCCATGGGCAGATTTGGAGCGTGGGCTTCTGCTCAGAACTCAATAACAGCACAAAATGGCTTAGTCGTAGGTTAGTCAATAGAGTATCAATAACTAGTATCATTTGATTATGTACAGACCTAGAAATTGGTTCTCGGTAAGTTTTCTTGAAGTCTGAAAGGGGTTGTATGGCTAGATGGCCTTAAGCTGAACACAGCTGTGTTGTAG
Seq C2 exon
GGAACAACAGTGATTCCTCTGCTCTCCTCGGTGCTGCTGGATAAAACACAGTGGGAGACGCCAGATGAATTCAACCCCAACCACTTTCTTGATGCAGATGGGAACTTTGTAAAGAAGAAAGCGTTCCTCCCCTTCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTGAGCGCGTTCTTGG
R:
AGGGGAGGAACGCTTTCTTCT
Band lengths:
305-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]