GgaINT0082268 @ galGal3
Intron Retention
Gene
ENSGALG00000016690 | F1NFF7_CHICK
Description
NA
Coordinates
chr3:111593331-111593889:+
Coord C1 exon
chr3:111593331-111593515
Coord A exon
chr3:111593516-111593747
Coord C2 exon
chr3:111593748-111593889
Length
232 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCTCTACCTTGGTTTGCAGGGA
3' ss Score
8.42
Exon sequences
Seq C1 exon
AAAAAGTCCAGGAAGAAATAGATCGAGTGATCGGCTCAAACCCCCCAAGAACTGAGCATCGAACTAAAATGCCATACACGGATGCTGTTATACATGAAATTCAGAGGTTCGCTAATATCCTGCCACTGAACTTGCCTCATGAGACGACCATGGATGTCACTATCAAAGGCTATTTCATTCCCAAG
Seq A exon
GTAAGACACCAGCAGCACTACTTTCCTTCCGTCTATATCCAGTGTGACACCTCTTCCTTTCTAGTCTGTCTTGCATCCAGGGATGCTCACTCACTCTGGGGTTCTCACAGCTACTTCAGCAGCAGCTACCCTGTAAATATGTTAATATGTTATATTTCTTCAGCTCCAGCATTCACCACTGCTCCCAACAACACCACTGTTAGTGCAATAACTGCTCTACCTTGGTTTGCAG
Seq C2 exon
GGAACCTATATCATCCCCTTGCTCAACTCTGTCCTGCAAGACAAAACCCAGTGGGAGAAACCATGCTCCTTCCACCCTGAGCATTTCCTCAACTCAGAGGGGAAGTTTGTAAAGAAAGATGCTTTCATACCTTTTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690:ENSGALT00000026937:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGTGATCGGCTCAAACC
R:
CTGCTGAAAAAGGTATGAAAGCA
Band lengths:
306-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]