RnoINT0044384 @ rn6
Intron Retention
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83635942-83636390:+
Coord C1 exon
chr1:83635942-83636129
Coord A exon
chr1:83636130-83636248
Coord C2 exon
chr1:83636249-83636390
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GGCCTCTTTCTGTCTCCCAGGGT
3' ss Score
9.24
Exon sequences
Seq C1 exon
CCAAGATCCATGAGGAGATTAACCAGGTGATTGGAACACACCGTACCCCAAGAGTGGATGACCGGGCCAAGATGCCCTACACTGATGCTGTCATCCATGAGATACAGAGATTGACAGATATTGTGCCTCTGGGTGTTCCCCATAATGTCATACGGGACACTCATTTCCGAGGCTACTTCCTACCCAAG
Seq A exon
GTGAGATTGTACCCCATTGTTGTCCTGTCACCCTTTCCTGGTTTCTCTCACTTCCTGTTTGTGTATCCCAACTCTCACTGCCCAACACAGAACTCTAATGGCCTCTTTCTGTCTCCCAG
Seq C2 exon
GGTACAGATGTGTATCCCCTGATTGGCTCAGTCCTCAAAGATCCCAAATACTTCCGCTACCCAGAAGCTTTTTATCCTCAGCACTTCCTGGATGAACAAGGGCGCTTCAAGAAGAATGATGCCTTTGTGGCCTTTTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827:ENSRNOT00000028261:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGAACACACCGTACCCC
R:
TCATCCAGGAAGTGCTGAGGA
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]