GgaINT0082268 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108405740-108406298:+
Coord C1 exon
chr3:108405740-108405924
Coord A exon
chr3:108405925-108406156
Coord C2 exon
chr3:108406157-108406298
Length
232 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCTCTACCTTGGTTTGCAGGGA
3' ss Score
8.42
Exon sequences
Seq C1 exon
AAAAAGTCCAGGAAGAAATAGATCGAGTGATCGGCTCAAACCCCCCAAGAACTGAGCATCGAACTAAAATGCCATACACGGATGCTGTTATACATGAAATTCAGAGGTTCGCTAATATCCTGCCACTGAACTTGCCTCATGAGACGACCATGGATGTCACTATCAAAGGCTATTTCATTCCCAAG
Seq A exon
GTAAGACACCAGCAGCACTACTTTCCTTCCGTCTATATCCAGTGTGACACCTCTTCCTTTCTAGTCTGTCTTGCATCCAGGGATGCTCACTCACTCTGGGGTTCTCACAGCTACTTCAGCAGCAGCTACCCTGTAAATATGTTAATATGTTATATTTCTTCAGCTCCAGCATTCACCACTGCTCCCAACAACACCACTGTTAGTGCAATAACTGCTCTACCTTGGTTTGCAG
Seq C2 exon
GGAACCTATATCATCCCCTTGCTCAACTCTGTCCTGCAAGACAAAACCCAGTGGGAGAAACCATGCTCCTTCCACCCTGAGCATTTCCTCAACTCAGAGGGGAAGTTTGTAAAGAAAGATGCTTTCATACCTTTTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690:ENSGALT00000026937:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGTGATCGGCTCAAACC
R:
CTGCTGAAAAAGGTATGAAAGCA
Band lengths:
306-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]