MmuINT1008079 @ mm10
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:26819035-26819483:+
Coord C1 exon
chr7:26819035-26819222
Coord A exon
chr7:26819223-26819341
Coord C2 exon
chr7:26819342-26819483
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AGCCTCTGTCTGTCTCCCAGGGT
3' ss Score
8.45
Exon sequences
Seq C1 exon
CCAAGATCCACGAGGAGATTAACCAGGTGATCGGAACACACCGTACCCCAAGAGTGGATGACCGGGCCAAGATGCCCTACACTGACGCTGTCATCCATGAGATACAGAGATTGACAGACATTGTGCCCCTGGGTGTCCCCCATAATGTCACACGGGACACTCATTTCCGAGGCTACCTTCTACCTAAG
Seq A exon
GTAAGATTGTACCCCAGTGTTGTCCTGTCACCCATTCCTGGCTTCTCTCTTTTCCTGTTTGTGTATCCCCACCCCTATTGCCCAACACAGAACTCTAATAGCCTCTGTCTGTCTCCCAG
Seq C2 exon
GGTACAGATGTGTATCCCCTGTTTGGCTCAGTCCTCAAAGATCCCAAATACTTCCGCTACCCAGATGCTTTTTATCCTCAACACTTCCTGGATGAACAGGGGCGCTTCAAGAAGAATGATGCCTTTGTGGTCTTTTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685:ENSMUST00000040944:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGATGCCCTACACTGAC
R:
TCATTCTTCTTGAAGCGCCCC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types