GgaINT0086696 @ galGal4
Intron Retention
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30791573-30796782:-
Coord C1 exon
chr3:30796670-30796782
Coord A exon
chr3:30791640-30796669
Coord C2 exon
chr3:30791573-30791639
Length
5030 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTTTTTCCTTTTCTTTACAGTAT
3' ss Score
10.39
Exon sequences
Seq C1 exon
AATTGTGATTTAAATGACGATACAGTGCTGAATGAGATAAAATTAGCAGATGCTGATCAGTACCAGGTACCTGATTTGTGTGCAGAAGAGCTTGCTGTAATCCTCGGAATTTG
Seq A exon
GTAAGTTAATTCTTTAATTACATTTTAAAAATAAATAAATACACCTCCCAGCCTCCCTTCACATGAATCTTTGTGGTAAGGAAATAAGGAAGTGGGAAGCTGATGGGATTTTTTTTTTCCTTTCTTTGTATAGTGTGTCCAAGAAGCTTAAATGAAAAATAAAAACACATTTTCAGTTTCTTAAGAGTAAACGTTAATGTCCAGAATAGATTCTCGGCAGTGTTTCATTAATGACTATATCATTCTTCTATCTCTTAGAAAGCCTTTTTTCCTTTGTGCCTGAGCTTAACCATCTTTCAAATACTGTGATGACATTTGTTAAGTTTTGAAGATATCTTCAGAGTCTGTAGTGCTTATCTTGCTGTGAAAGTCATCTATGTCTTTCAAGAAAAGCTCTGCCCCTCTTTTCAGTACAATGGGAGTACATGTACAGGTTCAGAATGTCTACTGCTAGTTACAAGCTGTAATGCAAAGTTCCTCTGGTTTTGCACATGCATTTTCTTTTCCTGATTTAAAGGAGTTCTGCGTTGTGTGGTTTTAGAAGTGGCAGAGAAGAGTAAAAGCAATCTGAGCTTTGAAAATAGGAAGCTAGCTGTCAATGAATACCCTGGTTTTCTTACAGATAAACAAGTTTCTACTAAGTTGAAGAAAGTTTTTATCATACTTTTTTCTGTGTGATTGTTTCAAAAGTATTTGTGTGGCAAACTAAAAATAGTTACTTCGTTACAGTATTCATTATTCTTACCACTAAAAGCAGTTTTCCAATCTGTAACTTGCAAAACAATAGAATCTGCGGTACTGCTGAAATTCCTTCTCAGGCCCAAAAGAAGGCTGGAAGCAGAACAGTGAGAGAATTCAAGCTCCTGAGTCTTAGACAGACTGTTTTCTCTATGCACATGGATGTTTTAAGATACATCTTTGTTATCAGATGTCAGCAATAATAGGCGAGCCAAAGGGCAATGAGGGAAATCAGTGGCTTAAGCTAGCAACCCAGAAATTGATGATTTTTCCTTTGTAGTATGTGGCTCTTGCTTGTTCTGTAGCTCAAGTTATAATCTTGATGCCTTCCCACTCCGTCCAGCTTTCCCCACTCAGTTTTCAGTGTTTTCAGCCATTTCTCCCCTTGTTTCATTAAGTGCGGTAAAAATTATTAGAGGAGAGGAAGTTCTTTTCTTTTTTATACCCATTTCTCAGATTGCAGTTTTATGAAGGCCCAGACATTTGCTTGGCCAGGTTCAAGTGAAGCATGAAGTTTTGCATCTCTGGTTTCAGTAATGCCCTTTAACCATTCAGCCCACTCGCTACAGTGAAAAGATCATGAGTATGTTCTGTGACTTAGTGTTTTCTTTATTGCCATTTTCTTTATTTTCAGACTTCAGCTTTCTTTCTATTCAAGGCCACATCTAGGTCCAATTTGGAGAGGAAAGGAGAGGAGTAAAGAGTGGGATGATGAATAATCTCCTTCATGAGAAACATTTTCATGTGCAGTTCATTTTCTAACACAGTATTGTCATCAGACTGTAGTATCTCACCTTCCCAATTTTGTCCATTATACTGCTATTGTAGATCTGACTAATTGGATTAAATAATTGGTTGTAAGCTTCAAACTACTGGCAGTCTAGCTTTTACTGATTTGCTGAGCAAATACTTTTCCTGCTGTGAAGTAGAACTTACTCTAAGGTTCTCTTTATCTGCCTAAAGAGTGTTCATTTCTTATAGTCATAAATGCTTAAATCATAGCTACATTTCTACTCTGTATATAGATTCAGATATAAAATATAGCTTTAGATTTGATTTGGTATGGAAAATCATTAGAACAATTTCATTCTTTATCTTTCAAGGGTGCTCTCTTGTACTTGTGTATCTTAAAGAATTGAACATGGATGTGGCAGAAATGGAAATTAAAACCATTTTATAATGGCTTTGAGCTGGAAGATGTCCATCTATATGCTTCAGAAACTGTGACAAAAATCTGTTATAGAATAAGGAAACCTTTCTGTCTGAATCAATGTCTTTTTAGGACATACAAAAATTCTGCATTATTTTCCTGTTTCCATGAAAAAAAAAAACCCTCAAAGAGAGAAGTTATATATGGCAGATTGATTTCCTAGCAGTATTGTCTAACACTTAATAAAAATAAAAAATTGATAACGCACCTGTCTTATGTGGGAAGAAGGGGAAAACTTCATTAATGTAGTAGCTAATATACAAGGAAGTGACAAGGCACAGCCAAGTCTTTGCTTGTTATTCTAAGCTCTTACTCATCACTATTCTCCCAAAAGCTCAATTGGTATTTCCTTGTGGCTGCAATCATACATACAGTACCAGATGTTGTGACACATCACCATAAGGTACATGAAGAGGGTGTGGAATGTCTGGCGTGTGAGGTCTTCAAGAGTCAGTGGACAAACATTTACCAGAAGGTGACTTAGAGGATCTCCTCATGATTACTTTCGCTGTGTAAATTGTCTTTCAACTACTCCACTAATGTTACTCCTTACAGATGTATAGGAAAGTTGTGGATTTTTTTTCTCAAAAAATTCTCATCAGTAATGCCCATTCTCTCTCACTATTCCACACAGCGTGCTTTATTAGGTGCTTCTGTTGTTATAGGATAGAACTATTTAGTTGGTTGATCAGAAGCCTATTGTTGTTACTAAGGAGAAAAGAATTTTTAATGAAATCATCAACTCTAAAGGACTGCAGTTAGACAATTACAATTTGAGCTTGAGCAGCTCATTCTTTTGGCTCATGTTGGAGTGAATAATTATCAGCTCTAAACCTGGTATCCTAGATTCTCTATTTTAGTTTATATAACACTTTTAAATGTTAGTGTTTTAATCAACAATCTCAATTTAATCTCCTGTAAGCCACTTAGCTTCTGTGATAATCTTAAAACAAACAAACAAACAAAAACCTTTGAAAATGGAGCATACATTTCAGTTCAGTTTACTTTGGGATTTTGTGTTGTCTCCCCTTTCAAGTTTAGAGAAAGTTCAGTAACAAAACATGAAGAAAAGAACTATTGAATGATAGATTTAATGAGTTGCAAAGGATGAAGAGAAGAAGGATCTTGTCTTCTAATAGAAATAGGAAATTGAATCTGCAAAGTGGGTGTAATCATGCTTTTGCAGTCTCTCAGCATACCTTTATTTAGCTGATGTCCTATGAACAAATGGCCATTTACTTTGTCAGAATGAAATGTATTCCAGTCAGATAGCTTAATTTCCTGAACACTTCATCTACACTCATTCCTGGGTTGCTCTAGTTGGATGTATTTTAGTGGTACCTAAAGAATAGCAGTTTCAGAAATGCTGAAGCAGCACTGTCATGAGAACTTTGTTTTTTCCTTAGTCCTCCATTTAATGGAGGTGGAATGTGCGAGAGACTTATACCATCAGGAAGCAGTTTTGGCTCTCTGCTACACATACGATTAATTTTCTTCTTCTGGGCACGTGAAGGTAAAGATATGAGTGTTTGAATGATGTCAGTTGTTTTCGTATCTTGAATGCTTCACTTCATTCTCTTAGAATTACTTCTTACTACTTTATCATACATTTTCTTTAGAGGAATAAATAAAACACATTGGGCAGTCTAGTCTTCTTTTCTCACTTTATATATAGTCTTGCTAAATATACTTAAGTATAAAGACTGGGTAAAATCATTAGACAGCAATGGTAATTATCTATAAAGAATTAACTGTATAGCAAGAATGAAATCAGACTGCAGCAAAGTCTTCTCTACAAAGTAAGTATGTAAAGAAGGGAGAATAATTTCTGTGACACATCATCACAATTAATATACCACATTTGTACGTTTTACTTAAACTTCCCAACAGCTTCATGTCATAAGGAATAGCATCCTGATTTTAAGTGTGTGTGTATGTAGCCATTATATAGGTTTGGCGATTAGGTATACACTGTAGTACATTTTAGGATGTATTTTCACTTTATATCTTTTGTTTTCACAAGGAACTTGAATTGTAACCCTGTTGCTTCTCTTTCTGCCGCCTGCAGGTGTCTCATAGTATATTTGTAGGCACTGATGGGCTGTTGTCAAAGGAGACAGTACACCCGTATGGAGTTGTTAACCAAATTTCCTTATTATCAATACAATAATGTCTAACTGTGAAAAAAATAATTCTGACTGTCATCTCTGTATTCTTCTGGGTTCCCCTTGGTGTACAAGAAGTTAGTAGTAATGTCGGTTAGTTGAGAGGTGTACTCCTGTGGTTATATTCCTTGAATGACCAGAGATTATGCTTGAGATTACCCTTCATCACTTTTTGAGCATTAGCATTAACAGAACCTGTGTTCAGTTGGCCATAGAATTTTAACTGAAAACAGATCTCTGTAAATATAGGGAATGGATTTAAAACTGGTTAGAATACATAAAATTTAATCCTGTAAATGAGAATGTAGTAAGACATTTCAGGTTAGTATGGCCTGGGAAAGGCACTATTGAGTATCCTTGTCCTATGAAACGACTCTTTTCTTCTGTGACTGCTCTGAAGTCTTGGCCACCTTCTGTATGTGCACAGTACTGTAGGGGAAATGCTAAGTTATGACTTGAAGCAATGATTGAACACCTGCTGGGAAGGCAGGACCAACCCAGGAGAGCTCAGCTGCATGCAGCGTACCTGAGTGATCAGAAGGGGTGGAGCCAGGATCCTCCCCTTCCCAGACCTCATTTAAGGGTTGGTAGTGAAAGTGAGGTATCTTGCTGGAGATCCCTGCCTACCTGAGGTCTTTTAAGAGTAAGCAGCTTTTTTTTCCTTTGTTTCTGTGTCCACGGCTGCTGCATTAGGGCTTATCCTTGCTTTCTGCAGCCTTGGACTTTGCCACCCTGCTGTTATTACTGTGCTTTCCATCACGTTATAGCATTATAACTGTGCCCTGCCATTTATATTTGTAACTCTTTTCTAGAACATCCTTTAGATTTCTGCAAGTTTGAGAGATGTAGTCTATACATAGCTGTGTACTAAAGAATAAATCTGCATTATTTTATATTCTTTTTCCTTTTCTTTACAG
Seq C2 exon
TATAGACTTCCAAAAGAACAATCCAATACACAAATTAACTGAAGAGGAACTTTTGGCTTTTACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538:ENSGALT00000017153:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]