GgaINT0087773 @ galGal3
Intron Retention
Gene
ENSGALG00000016155 | COL19A1
Description
NA
Coordinates
chr3:85689231-85689293:-
Coord C1 exon
chr3:85689252-85689293
Coord A exon
chr3:85689236-85689251
Coord C2 exon
chr3:85689231-85689235
Length
16 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GAAGGTAAACATTTTCAGAGGTT
3' ss Score
-7.05
Exon sequences
Seq C1 exon
ATTGCGCTGCCACTAGTGGGAGACATGGGTACTATACTGAAG
Seq A exon
GTAAACATTTTCAGAG
Seq C2 exon
GTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016155:ENSGALT00000026059:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.7=7.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]