GgaINT0088318 @ galGal3
Intron Retention
Gene
ENSGALG00000016330 | ANGPT2
Description
NA
Coordinates
chr3:91435059-91442204:+
Coord C1 exon
chr3:91435059-91435189
Coord A exon
chr3:91435190-91442102
Coord C2 exon
chr3:91442103-91442204
Length
6913 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTACATAATTACTTTGGTAGGCC
3' ss Score
3.87
Exon sequences
Seq C1 exon
CAGCTAAGAAGAACTTCATAGCTAAAGAGGAGCAAATCAGCTTCAAAGACTGTGCTGAAGCTTTCAAATCTGGACTCACAACAAGTGGAATCTACACCTTAACATTTCCTAACTCTGCACAGGAGAAGAAG
Seq A exon
GTAGGATGCCTATAAATACACAGTATGTGTTAAAAAGTTATTTGATCTAGTAAACATGCTAGTTTAAGGGTTAGTTAATAGCTAACTTATTTAGCATTTTTTCATGTAGGCAATCACTGACATGGATGCGAGTATCTGAAAGGAGGGTGAAAGCACTTAAGGTTATCAAATCTCCAACTCCAATACAATTGGCCTTCATACTGAATGGGACAGATAACAACGACAGCCTAAAATGCATGAAAGCTCTCAAATAAAATAGACTTTTCCTTGGAAGATATTCCTATCCCGTGATCAGGACAAACTGATGTATATCAGCTGTTAGAATTTTACAGACATGACGACCACTGGCTATACTTTAACAGCTAGTTTACTGTTGTATGCTAGAAGAATGCAGCTTTCCATGAGATCACACTCCATGAGAACACACTCAAGCTGAAGATCACAACACCCTCAAAAAAGGAAAGTCAAAGCTAGCATTTAAGGCAGCCAGGTGGGCCAACATTCTCCTGTTTCCTCTAAGTTCCTCACATGTTCAATGCCCTTCAAGCAGCAAAAGGAATTAAAATCAGACTTCAGAAAAAAGGGACATGGAAGAGCTCAGGGGTTTGTACTCATGTAAGCAATCTCCTAGTACTGAACCCATGTGTGAGATCCAGTTTAGATCAGCACAAATAACAAAAGGTGATAAAGAAATTTCCTTGAAACTACAACCTTAAGTTGCTTAAATAAAAGGTAAGACTTCACAGTGGTTTTGCTGTGGCTCAATATTTTTTAAAGCCTAGAAAAAGGAAAACCAACAAAAAGTGTAAAAAAGAATGAAGGAACATTTGGAAAAGCAAGTGGTAAAACTATAGTAGTAAATAACTGGTTAAAAAGATTTCATCTAGCCCAAGCCAGACATGATCTTTACCCTTAAAAGTTCTCAACTAAAGGAAATAAGCCATTTGTTTGGGTAAGATCCATAAAATACAACACACAAAAACTACTATTTCTGCAGATAACATCTAGTAAAATAACGGTATCTGCAAGTTTGTATCTACAGAAAATAGACCGCTTTTCCTTTGGAATAACTTCATCTATATTTGATACATCTGCTTCACAAAATAACTAGTTACATAAGATGAAATGAAGTGTAGTATTATGCATGAAGCAAAAGGGTATTTAAATAACGTAGATGTCTACAATCACAACTCTAAGTGCAAGTTACTGCATCTCTAAAGGAAAAGATTGCAGTGGTCTCTCCTAGACATCTCAGGACAAGCTACATTCCTTGAATCACCTAATGCTACTTGCCTCAAGGGTTTACCTTTGGTTCTAATTTTATTCTCAAATACAAAGAGCATCAGTATTTTCTAAAAGCAGACACAAGTGCATGCCATATTACAGAATGGTAATTTCTGAGTGTCAGAAACACTGTGTTTGCAAAGTCATAATGTTTTAGTCAATTTATATGATCTGAGAACTTAAAGTGACTCAAATTTCTACAAAACTAAAACCTAAAATACTGTATTCCTGAACCAATTTCCTAGACTGTAAAGCATTGGACGCTTTACCTTTGAACATGAAGGCCTAAAACAGACAAAACCAAAACAAAACAAAATAAAACCACCTGCAACATTTTGACAGCAGTGATTCACTAGGCTAAAAAACCAGTTTCAACACCGTAATTTAATTGAATTCAATTAAACGTTAAAAGAATTTTCATCTTATTCTGCCTACTTCCAATAAAATGGAAATGACAAGCAAAAATCTTGATTTACTATACAAAGTGAAAAACAAGAAACTAAAAAGTTTTAATTTGATGCAGGCTTTTTTTTTTTTTTCTTTTTTTAAATACAAATACAAATGCATAAGAGGGGTTGTCAAAGAGAAGTGAAGGTTTAGGGATAGTCAACACCTTATACCATTTTCAACTGTTTCTAGCCACTCAGACCAGGAAATAGAATGACCTTTTTCATGTGCCAAAAGTGCTGCACTGCTGTTTGTGTTTTCATCTTTTCCTCTTGTAACACCTTCTGACCTCTCAACAAGCTTATAAACAACTTCTGTGTAATCTGTGTAACTGATCCCACTCCACTAATTTGTCTCCCATCATAATACAAAACTGAAGTATCACATATGAGCTGAGAGGAAGAATTATTTCATTCCATTAATATTTTCAAACTTTCCTGTTCTGCATCAGGACAAAAGCTAAGTCCTTTTAAAAACACAGAGGAAAAACAGCAAGAGACTGCTGACATAAGGAAAAACGGCAGAAGCAAACCCATGAAAAGTCAATAGCTTCATGTTTACAGCGGTAACTTGAACCACTTAACCTCCTGATTATAGTTAGACAGAACAGTTGAGCCTGGATGACTCCCTTATGTTGGCTTAACCACTACCACAACCATTACCAAAATAGTGTCCCAAATCTTTAAAACAGTGGCAGAGCTGTTCCCCATTCCCACCACCACTGAGCAGGGCTTTCATTGCAGAACTCATACATTTCAAATGAGCCATTTTCTTTAAACAAGATTTCATTGCAGAAAGTTATATAGGCAAGCCTGAATTTACCAGCAAAAGTATCTTTGCATTACTTTTATAGTAAGTGATCACAAAGATTACTAGGTTAGTTATCTCCAGAAGGAGCCCATTCCATGGAATTTAGATCAAAAACACACATACACCAAGAGTTTCAAACCCCCAAGCACTTAAAAAGACGTATGTGCAATTCTCTGATACAACAGTGGGTGGGGGTTTGATAAGGGCTGTTTTTTTTCCCGAGTTTTGGAAGTCTGGTCACCTCACTTTTCAGCTAGTAATTGGTATTAGGATAAATTACACAATAAACCAGACATATAGCTATTTTTTTTCCACAACAATGAAAATAAGGCTGCAATTCTTATCTAGTCATATCTCTAGGAAATAAAGCAGAATACAAAATCATTGAGCATCAGGACTAAAAAGCTATTTATGAGCATCGCAACTCAAACATTCTGACAACAGCCAGAAGTGATGCAAAGTTAAACTTCACAGATGTGACATCCACAGCTGCTGTGGTATGAAAACTGTAGTGGTTATTTATCCTGATAACCCGCCCGGTCTCACCATTCAGAGACTGGATATGAAAACACTTATATCTTTGGAATAGGGACTACTTCTGGTTACAAGCATCATATAGTATTTAAAACAAATATAGCACTGACCATCAGCTAAAGGTGAAAAACAGTTCTCTTTAGCTCTCACAGAATCATAGAACAGCTGGGGTTGAAAGGGTCCTCAAAGATCCTCTAGTTATAAGCTGTGGGCTGCAGGTAGGGTTGCCAACCACTAAATCAGGCACTAGATCAGGTTGTACAGGCCTGCGTCCAACCTGGCTTGAATACCTCCAGGGATGGGGCAACCATAACCTCTTTGGGCAGCCTGTTCCAGCACCTCACCACTCTCAGTGAAAAAATTTCCCAACATCTAGTTTAAATCACACCTCTTTTATTCAAAACTGTTCCCGCTTGTCCTGTCACTGTCTACCCATGTAGAAATTTGATTTATCTCCTGCTTACAAGCTCTCTTTAGGTACTGGAAGGCTGATATCAAGTCTCCCCTGAGCCTTGTCAAGGCTGAACAAGCCCAGCTCCCCCACCTTCTCTTCATAGGAAGGGTGCTCCAGTCCTCTGATCATTTTCATGATCTGTTTTTGGACTTGTTCCAAAAGCTCCACATCTTTCTTGAGCTGGGGGCTCCCTACCTTCGTGCAGTACTCCAGATGGGGCCTCACAAGGGCAGAGCAGAGGGGGACAATCATCTCTCTCACCCTGCTGACCACCTCTCTTTTGATGCAGCCCAGTATGCAGTTGGCCTTCTGGGCTTCAAGCCCACACTGCTGGTTCCTGTTAAGTTTTTCATCTCCCAGGACTCCTAAGACCTTCTTGGCAGGGCTGCTCTCAAATAGTTCTTCCCCTAGTCTGTAAACATACCTAGGAGTGCCCCAACTCAAGTGCAAGACCTTGCACTTGGTCTTGTCAAACCTCATTAGATTATCGTGTGCCTAATTTTCAGCGTGTCCAGGTCCTTCTGGATGACATCCCTCCCTTCTGTTGTGTCAACTGTACCACTCAGCTTGGTGTCATCAGCAAACTTGCTGAGGGTACTCTCAATCCCACTTTCTGTGGAACTGATAAAGTTGTAGAAGAGCTACAACACTTGGTCCCAAGATGGACACCTGGGGGATACCACTCATTGCTGGCATACCTGGACACAGAGCCATTAACAACTACCCTCTGGCTGTGACCATTCAACCAATTTTGTATTCACCTTAAAATCCATATCTCTCCAATTTAGTGATAAGGATGTGGTGTGGGCTCATGTCAAAGGCCTTGCAGAAGGCCAAATAGATTACATCAGTTGAGCTTTTTTCTACTTATGCTGTCAGTTCTTCACAGAAGGCCAACTTTCACAGTGCTTCAACTGCTAGAATTGCAAGTACTGAAGCAGTACACAAGATAAATCATATATGTACTCTGCCAATTTGTTGTAATTTGAGATGCTAATCTCTTTATTCATTTTGGCAACTGTTTCAAGACTCCTGCTGCCTGTCTAATCTTGGTATCTATTTTTACTAGTTCTATGAAATGTTACATTTCTTCCTTCAGAATATAAAATCTAGGCTAGGAGGAAAGGTCAGAAGAGCTGTATTTTAGAAATGACAGTTAGAGAAAGCCTCCAATGTGTATCATCTTACTGAAAAATGATTATTTTTTTTTAGTACAAATAAATGCTTCCTCTCCCTATAACTCTCACACAGATCGTTAAGAATTTATTCCATCTACTGACTAACACAGCATTTTATTGTTTTTATTTTAAACTAAGCAAATCTTTTCCTTAATCTTCATTGTACCAAATAGGCTATCTCTATCCTTAAAAATACTTATGAATATATAAAATTGTAGAATAACAGTCAAGCCCGTAAGCAAAATGTTTCATATTATTATACTTAAAGATGGTAAAAATAATATTAACTTTTTAGCTATTACAAGGGGGCAAGTGTACAACTGTAAAGTACAACAGTAAGAAACCATACAATGAAATCTCAAACAACAATAATCATTTTTCACTGACTCACCTTTCACAACAGCTATTATGACACTAAACGACAACTATGTCAACTGTTAAATTCCCTTTCCCTATGCCATATTTCCCACCCAATAAAGGAAAGAATTTCTATTTTTAACATCTAACTGGCACCTTTTGGAAGCACTTAGAGATGAATTTTTGTTTGTGTGTGTGTATGTGTGTGGAAGAAATATCTGATAAAGTTTACATACAATTTATGCCATCATTATTGACAAGAAAAGTCTACTCTTCTTAAATTTTCTATATTGTATCGCAGTTCCTACTAAAATTGCTTTCCACTTTTAGAAAAAAATTTATGTTACCACTGTATTTATCCCAAAGAGCACACATAGTGCCTATAAAGTCGACCATCTCGCCATCCACATATAAAATATTCCTTTTAGAGCCAGTACCCATTTTAAGACATCCAGTTTGAGAATGTTGCAACCTTCTTAGAACTAAAATATTTTGCTGTTTTAAGGCATTATACCTTTAAAGTAATAATTCCAGATGAATTGAAATGTATACAGTAGGCTCAAGGAAATTTTATGTAACATTCAAAAACATCAATTAACAATTACAACATCAGTAGGCACCATTATCCTGTATAAATTAATAACTGCTTACCAAGAGAGACTGGGTAAAAACTACACATTTCATACAAGGCTGGAACAGTTCTGTTCTGAATCTGATTATTATACCATCTCTTTCTTCAGTAGCATGAATCTTCAGAGTCAACAACTTTCTCTATAAGCAGTGCTAACTGAGCACTTATTTGATCAGCATTTTAACTTACAGAGAATTAAGAAAAGTATCAGCATCTGCTTTAGTGCATCTCTAGTATCCCTCATCACAGCCTCTTGTGACAATCAGTTTTTATACGTGCATTATTAGCTTTTTAAAACAGATTTATCACTATTATATCTGATCTTTAGAATTTTATTCCCTCCTTTTCAAGACCATTTTTATTTTTACTAAGTTCAATTTCTATGCTATTACCAAACCATTACCAGTCATTAAATTAGTGAAAAGAAGTTCATATATAAGAAATTGCATTCAGCAGTACAAATTAAATTTGCTGCTTTCAGTTAAATTTAATTCACATGACATACTTTGACCAGTAATTCTTGATCCAGCTCACTTTCTTCCCTCTTTTATCTTTACGAGAATTTGCACAATTCTCTGATGCTGAACTTTAACATACAGTACCTGCTTTGGATTTCCTATATGTTGCAACTTGCTGAAAAACTAACATGCTTAATAATAGCAGCTCTGAGAGCTTGCTTTCCCTTCAAAAGCACTTTCTGGCTCATCTACCTGTTCAAAGAACTAAAATCATAGAATTGTTTGAGTTGGAAGGGACCTTTAAGACCATCTAGTTCCAACCCCCTGCTATAGGCAGGGACACCTCCCACTAAACCAGGTTGCTCAGAGCCTCATCCAGCCTGGCCTTGAATGCTTCCAGGGAGGGGGTATGCACAACCTGTTTCAGTGTCTCATCACTAGTCCTAATAAGAACACCTCTTGTGGAAGAAGATGAGAAAGACATATAGCTTCAGTGCAACTCAGTCACGATTTAAGGGCATGCATAGGTACACTGTGACAAGCAGCAGTAATCATTTTGGCAGGAAGGAATACCGCCGAGAGGTTGTTTTGGATACCACAAATGGTTTGCATGAAAATTATGAAAATCAACACTTTTAGGCTAATACACATTACACATTTTAAAACTTTCCAGGATGGAGAACTGTGTAAAACATATGCTCTCTGTTTTAATTTTCACTTGAGTGCATGAACTTACACTGTTACATAATTACTTTGGTAG
Seq C2 exon
GCCTACTGTGACATGGAAAGTAATGGAGGAGGTTGGACAGTTCTTCAGAGACGTGAAGATGGCAGCGTGGATTTTCACCGGACATGGAAAGAGTACAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330:ENSGALT00000026341:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041569=IncA=PD(1.5=6.8),PF0014713=Fibrinogen_C=PU(14.0=68.2)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]