MmuINT0015004 @ mm10
Intron Retention
Gene
ENSMUSG00000031465 | Angpt2
Description
angiopoietin 2 [Source:MGI Symbol;Acc:MGI:1202890]
Coordinates
chr8:18699068-18703609:-
Coord C1 exon
chr8:18703479-18703609
Coord A exon
chr8:18699170-18703478
Coord C2 exon
chr8:18699068-18699169
Length
4309 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACTGTGTGCTTCTCCTGCAGGCC
3' ss Score
12
Exon sequences
Seq C1 exon
CCAAGAGCTCGGTTGCTATCCGTAAAGAAGAGCAAACCACCTTCAGAGACTGTGCGGAAATCTTCAAGTCAGGACTCACCACCAGTGGCATCTACACACTGACCTTCCCCAACTCCACAGAGGAGATCAAG
Seq A exon
GTAAGGATGACCCATGACAGCTGTGGGGGCTCTGCTGTATCACTGCATGGGCCAAGGAGCCCCTCAGCATCCATGCCTCGTGCTCTTCCCAGGCTCACACTGAGGGCTCTGACATTGCCGAGTACAGAACACAGATGCTGAGCAGATGGTCTGCAGCTCTAACTTCCCCAACACACATGTCCTGTAGAAATGATGCACACACTCAGGTGTTTCCCCCGAGTTTCTGATATATCATTAATTTTAATGAATATATCTTCTCCAAACTGAGGCTGGATTAACCAGAGCTTGTCTTTTGATCATTTTACTAAGCAACAGTTATACTTCATTTTGGAGAGAGCTCACTGAGACCACACCCAACACAACTGTTCAGGAGGCCCTGATCTGCACACATTTCCCTTTTCATCATAGAAACGTAGATTAGAACGTACTTAGCAGATAGTAGATAGAAACATACTTAGCAGAGTGAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAAATCACAAAGCAAGAATACTTTTATTGCTCTGATGGACTTCTTTGGTCCTACTGGCCACTCTTTCTTTAAACTGCCTGAGGGCTGAGCAGAGCACGCAGCTCCAGGACCTTTAGTGTCTATCCTGCTTTACACCAGGATGCCGCCAGCTCCAAACATGCATGGGAAGCTGTGTCAAAGTAGAAATTTCCAGAGGCTCCTGGAAGTAGCATCTTTTTGAACTCGGTATTATCTCCAGAATTTAACATGGTATCAAAGAAAAGTCCATGCGCTTTAGAGTTTAAAGATGTGGAATTTGAAACAGTAACATACACTTTGATTATGAATTAAAAACAAATATTGTGCTCTTCAGAATAATATTTTCCAAAGAAATATAATTCACTCATGCTGCTTTAAACCAACCTTGACAATCAGTTAATGTCCCTGGTTACGTAGAAGCAGAGCACTGGGAGGAGGGGAGAAGCCGTACAGCTTGCTGCAGACAGAAATCTAGCAACCGCAGACTGAGGGTCTCCACTGTCTGCTACGCAGCTTGCCAGCACAGACAGGTCTTTGCATTATGGTGTCTGTCACTAGATGCCTGCCATGTTCTTGGCCTGGTGATAACAGGGACAGGAGGAGCAGAGGCTGCAAACACTGTGGATCTGGGACCATGCTGTCACATAGTTACACTGCTCTGGGAACGCTCTTCCTGCCAGACATCATGGTACCCTCACAGTTTGACGGAGATGTAAAGATCCAGTGCTCTGGATCATGTGTCTAGGTCACGGTTATAGAAAGATTTATAATCCCTTTAGATATTCTCAGTAAAAAGAAATCCATTTACATGGCCAGGAATAGTAAGTCGTTCAAAACCTTGAGTTCTTTTCTAAAATGCCTGGTCTACACGTGGTGAGGTAGCCTAGTGGGTGACTGTGATTGCCATGTAAGCCCGGTGACCTCAGTGTGACTCCTGGGTCACAAGGTGGAAGGGAAGAATTGTCCTGACCCCTACTTGCATGCTTCCCCTTCACACCCATGCATGCTCATACTCGACCTAACCTCCCCCCACCCCACTAATAAAGATTTAAAAATTAACATAACTGGGCTGTATTGTATTGTTACTTCTAAACTTCCCTCCAGACTTGAGGTTCTATAAAAGACAGCGTGATCTTTATGTTACTGGCCCATTACCCCATCTTCCAGGGTGTGACAGTACCAAAGATGGCCCTGGCATAATGATACATGAAGCCTGCACAAGAGGTCACAGTGGGCATGGCCATCTAATTCTAAGGAATTAGATCAAAGGCTTCAGTATGGCAGCTTTACATTTGATCAGTTTAATAATCCAGTAAACATGGCATTTACATTAGGTTTCTGTATATGTACGCAGGCTACACACTGCATAGGGCGTCCGTGAGCAGCACAGGCATGTGCTTTGCTAGTTAGAAGCACAACTGTTTCCCTCCCCAGACTGCTCAGCACAAGACTCTCAGTGCCATGGGCGTCTGTTATTTATTCATTTCTCCAAGGCCTGAAGCTGGAGCATAGCACTTAACTCAAGCGTCACTTGCTGAACAGCTTAAGGCCTTGGGTCCTTGTGCCAAGCACAGGCATGCAAATCAAAAGCACTCAGTGCCCCCAGGTTTGCTGTCATGGAAGTGGCCGTGCCCTGGCCTGGCTGCCGCTGCCTTTCAGATCTTGTTCTGATCCTTGTCAGTATTTTTACTGAGCATCTCCTGACCGTGTGGATCCTCTACAAGAATATTATCTCTTTTTGCAAATTTCACAACCCAGTGAACCATAATTCTCTGTTTCTCACAAATGCTTTGTTCTCCACTTCTTAAAAAGCTGGACAAAGTATTCTGAGAATGTTCTAGTAACTTTGTCATGGTCCCTAATGGATTCAAAGAGAATAGAAACATGGTTCATGTAATTTATTTATATAGTAGCAGTGACCCTCAACGTTGGGACTCTTGCTTTTGACTCCCACAAGATAAAATGATCCTCTAGGCAGGAAAAAAGCCTGCTTTAAATACCATCAGGCAACTAAGTGCACTGTGAAGATTTTAACACTAAGGAATCAGATATTAGAACGAGGGTGGGCTCACTACAAACATTTCTTCCCATTTACCAACAAGCCACTCAGGATGCTGGGGAGTTAATGTGTTTGCATAGCCATGGGGTCCTTACCCTAGTGCCCCACGTGAGGTTTTTATAAGACACTGTGTAAAACGGTGCAGCACTGGTCATCTGGTTGATCACAGGCAAATAAGATGAAGGATTCCTCATGAACTGACTTCAGTGGTAATCTGCCCGCCTATCAAAAGGTTCAAATTTCTCTGTTTTGAGTAGCATGCTGCCATGGAAAAGATATGACACAGGAATCAAGGAGACCATATTCAAATTCCTCTCACCTTTTGGCCCTGTGACTGACCAAATGAACCTGTGTCAAATCAATCATCTCTAGAGTGATGTGACATGGCAGGTAACTTGTGTGAGATATCTGACAAGTTGCGCACAAGAGAGTCAAACTGGTTAACTACAGAAACCAGCCCTTTATACACTGTGACAACTGGGGGTTCCTTCAGCAAATCTGTCCTGTGATAACCAGAACTCCAGCAAGTCTGTCATGTGTTTTTGAATAGTTACACCGAGGACACAGTGATTCTATTTCATGCCACCAGGCCTTTCTAAACCCAAGTCACTGCGGAGGGAAACAGGAGGCCAGGACCTTTGGAGTGGGGGTAGAATAATGGTGGAGAGAGGCCTCTCAGTAAAGCAGTCCACTGATGGTCTCAAGGACCATGTCCGACAGAGGACAACAACATGGAGGACAGTATGGATTCCTTTGGGTTTAGTTCCTTATAGGCAATATGAAGAAATAGGGTGAGAGGCTCATGTGGCTCTTTTAGCTCTAAATCACAAACACAGAGCAGCTATATTAAAGTTAACCCTGCAAAAATGGTCCTCCTAGGTCTCCAAAGACCATGGCACCGAACAAAGGAAGAATATTCACAACTGGTTGGGAAGCCTAATATTTCTACCATGTATGCTTTAGGGAAATTATCTTATTTTCTGGAAAACTTTTTTTCTTTTGGTTCTACTGTAATCTCATAAAGTATTTATATAATCTTATTTTCAGGGGGTTTTAATTTTTACAATAAAACTCCAGCTGAGTTGAAATTAAACATTCAAGCCCAAAGAATTTTGTGTTCCAGGCAAAAAATTTAAAGACCACTGAGGCAGTTTAAAAGCAGAAATACTGGGGAAAAATGCCGCAGGCAACAAAGGAAGTATGTAGAAGCCTGAAATCAAACCAGTGTCAGAGCTGCCTGGTCAAGCTGGGTCACATGGTGCTGGCGCTGCAGAAACCCCTCCCCCCAGGCCCTCACAGGCAGGAGAAACTGGCTTTCTCTGCGCACAAAGGAAGCCCAACAGCAGGAAAACATGGCGGGAGTTTGGTACCTTGTAGCTAATGGACACAGGGTGTAGCCAGCATCGAGGGTTGTCAGTGCTATGAACACAAGTCTGTGTTTTTCTAAAGATATGGGATTTGAGGAGAATCTGCCAGTTTCCCAGGTACAGGGAATCACTCTCAAAAACAATTATGGCGTGGGACTCTACAGCCAGAGCAGGAAGTTCCTTTTCACCAGTGACTCATGTGGTCTGACTGCTTGTGAATCATCATCATTTTAAAATCACTCTAAAGACCTGACAGCAACGATTCACTCCCCTGGTTACCACAGAGCCCCCTGGGAACACACCGCTGCTGTAGCAGCCTGGGTCACCAATGTTCAGCCTGCAGTAACTGTGTGCTTCTCCTGCAG
Seq C2 exon
GCCTACTGTGACATGGACGTGGGTGGAGGAGGGTGGACAGTCATCCAACACCGAGAAGATGGCAGTGTGGACTTCCAGAGGACGTGGAAAGAATACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031465:ENSMUST00000033846:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=68.2)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types