RnoINT0017301 @ rn6
Intron Retention
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:76004221-76009223:+
Coord C1 exon
chr16:76004221-76004351
Coord A exon
chr16:76004352-76009121
Coord C2 exon
chr16:76009122-76009223
Length
4770 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AACTGTGTGCTTTCCTGCAGGCC
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATAAGAGCTCTGTTGCTGTCCCTAAAGAAGAGAAAACCACCTTCAGAGACTGTGCAGAAATCTTCAAGTCAGGACTCACCACCAGTGGCATCTACACGCTGACCTTCCCCAACTCCACAGAGGAGGTCAAG
Seq A exon
GTAAGACGGGATGTCCCACGGCAGCTGTGGGGGCTCCCTGTTTCACTGTACGGGCCACGGAGCCCCTGGGCATCCATGCCTCCTGCCCTTCCCAGGCTCCCACTGAGGGCTCTGACAGTGCTGGGTACAGAACATGGATGCTGAGCCGATGTCTGCCACTCTGCCTTCCCCCACAAGCATGTCCTACTGAAATGAGCTACATCCCCCAAGGTGCTGACATCATCTCATTAATTTTAATGAATAGATCTTCTTCAAACTGAGGCTGGATTAACCAGAGCCTATCTTTCCGTCATTTTACTCAGCAATAGTTACACTTTATATTGGAGGGAGCTCACTGAGAACACACCCAACACAACAGTTAAGAAGGCCCTGATCTGCACACATTTCCCCTTCTCATCAGAGAAACTGTAGATAGATAGATGTGCTTAGCAGTCAAAGTTTAATAAAGTCAGCACAGTGAATCCTTTTCTCAAGAAAATCACAGAACAAAAATACTTTTAGTGCACCGACAGACTTCTTCGGTTCTACTGGCCACTCTTTCCATAGACTGCACATGGGCTGGGCAGAGCACACGGCTCCCGCACCTTCAGTGTCTGGGCTGCTTCTTGCCAGGATGCTGCCAGTTTTCCCATAGAGACAACTGTTCCCATATGGAGCTGCTCACAGGGTGCCCAGAAAGCTTAGAGTCCCATAGCTCAGAGTGGGGGACTAGGGCCCTATGTAGTGCAGCCCAGAAGACCTGGGCATGCTGCCCTGGGGTGCCGTTCTTTTCCCTCTCGTACGGGGGCGTTCAGTTGGGTGGTTGCTCCATCTGTACAAAGTAGACAGAAACCCTGTCCTGTCGGGCAGGGCACGTTAACACAGTCACACTAGGCCCTCCTCGGGCAGCCTGGGAGACTATCTCAGCAACTCATGTCCCGGGGCTTCTCTGAGAGGTCTGGTGAGGTCGTATGACATCGCACGAGAATCAGAGCTAGAGAATCATCACACTGCACCCCTCTGTGTGTGGCGTTTGGACAGATATGGCTGCATCTTTGCAAAAGCCAACAGGACTCCAAAACATGCACAGGAAGCTGTGTCAAAGCAAAAGTTTCCAGGGGCTCTTGGAAGTAGCATCTTTTTGAACTCGGTATTATCTTCAGAATTCAACATGGTATCAAAGAAAAAACACAAGTGCTTAAGAGTTTAAAGATGTGGAATTTGAAACAGTAACATACACTTTGATTATGAATTAAAAAATGAATATTGTGCTATTTAGAATAATACTTTCCAAAGAAATATAATTCATTCATGCTGCTTTAAACCAACCTTGAAAATTGGTTAATGTCCCTGATGGCCTAGAGGCAGAGCATCGGCGGGTGGGGTGGGGAGGAGAGAAGCTATACAGCTTGCTGCAGACAAAACCAGCAACCCCAGGGTGGAGTCTCCACTCTCCTATGCAGCGTGCCAACACAGCTCGTGCAGGACGGTGTCTGTCATTAGATGCCTGCATGTTCTTGGCCTGGTAAGAATGGGGACAGGAACCCCACAGCTGACAGAGGCCACAAGCACACTGTAAACACTGTGGAACTGGAACCATGCTGTCACATAGTCACACTGCTCTGGGGACGCTCTTCTGGGTGGGTTCCTTTTCTGCCAAACATCATGCTACCCTCACAGCTTGACAGGCACGGAGACGTGAAGATCCAGTGCTCTGCACTGTGTGTCTTGGTCATGGTTAGAGACAGACTTATATTCCCTTTAGCTATTCTCAGTAAAAAGAAATCCGTCAACACAGCCAGGCATAGTAAAGTTTTCAAAACCTCGACTTCTTTCCCAAAATACCAGGTCTACATGTGGAGAGGCAGCTTAGTGGGTGGAAGTGATGGCTTTGCAAGCCCCAGTGGCCTGAGTGTGACTCCGGGGTCAGAAGGTGGAAGGGGAGAATCGACTTAAAGGTTGTCCTGACTTTGACTTGCTTGCTTTCCCTTCACACCCACGCATGTTCACACCCGACCCACTCCCTCCCACCCCCCATGCACTAAGAAAAGACAGGTTTAAAACGTAAAATAACTGGGCTGTATTGTATTGTTACTTCTAAACTTCCCCCCAGACTTGAGGTTCTATAAACGACAGTGTGCTCTGGTGTTATTGCCCCGTCACCCCACTGTCCAGGGTGTGATAGAACCAGAGATGGCCCTGGAATAAATGACACAGGGAGCCTGCACAAGAGGTCACAGAGACAGGGCATCTAATGCCAAGGAATTAGTTCGAAGGCTTCAGTATGGCAGCTTTACATCTGATCAGTGGACGTGGCCCTTGCTTAGGTTTCTGTGTGTAGGCTATACACTGCACAGGGCATCCGTGAGAGGCATATGCATGCGCCTTGCCAGTTAGAAGCACAATTGTTTCCTTCCTCAACCTTCTTAGCACAAGACTCCCAGTGCCATGGACGTCTGTTACTGATTCATTTCTCCACGGCCTGAAGCTGGAGCACAGCACTTAACTCAAGCATCACCTGCTGAACAGCTCAGGGCCTCGGGTCATTGTGCCAAGCACAGGCACAGGCACGCAAATCAAAAGCACTCAGTTCCCCCAGGTTTGCTTTAATGGAAGTGGTCATGCCCTGGCCCGAGTGCTGCTTGCTGCCTTTCAGATCCTGTCCTGATCCTTGTCAATATTTCTACTGAGCATCTCCTGACCACGTGAATCGTCTACGAGAATATTATCTCTTTTTCCAAATTTCGCAGCTCAGTGAACCATGATTCTCTGTTTCTCACAAATGCTTTGTTCTTCACTTCTTAACAAGCTGGACAAAGCATTAGGAGAATGTTCTGGTAACTGTGCCATGGTCCCTGATGGATTCAAAGAGAATAAAAACATGGTTCATGTAATTTATTTATGTAGTAGCAGTGACCCTCAATGTTGAGAATCTTGCTTTTGACTCCCACAAGATAAAATGATTCTCTAAACAGCAAAGAGCCTGCTTTAAATATCATCAAGCAACTAAGTCCACTGTGAAGGTTTTATTAGGACAAGGGTGGGCTCACTACAAACATTTCTTCCCATTTACCAGCAAGCCACTTAGGATGCTGGGGAGTTAATGTGTGCACAGCCACTGGGTCCTTACCCTGAGTGAGATTTAAGAAGACACTGGGATAGAATGCTGCAGCACCGGTCAGCTGGTTGATCACAGGCAAATGAGACGAATGATCCCTCATGAACTGACTTCAGTGTGGATCTGTCATATCAAAAGTTTCAAGGTTCTCTGCTTTGGGCAGCATCATGGCATGGGAAAGACATGACATAGAAATTAAGGAGGCCATATTCAAATCCCACTCGCCTGCTGGCCCTGTGACTAACCAAATGAATCTGTGCTAACTCAATCATTCCCAGATGTCAGCATGGTGTGAGACAGCAACTCGTGTGAGCTGTCTGACAGCTCACATGCCGGAGAGTGAAATGGTGGTCAACTACACAAACCAGTTCCGATACATGGTGACAACCGGGGTTCCTTAAGTAAATGTGTCCTATGATAACCAGGAGAGTCCCTCCAGCAAACGTCATGTGTTTTTGAGTAGTTACACTGAGGACATAGTGATTATGTTTCAAGCCACTGTGTCTTTCTAAACTCTAGTCCCTGGGGAAGGCAGCAGGTGCTCAGGACCTTTGTGGGGAGGTAGAACACTTGGTAGAGAGAGGCCTCAGCAAAGCAGTCCACTAACGGTCAAGGTCCATGAGCAAGAGAGGCAACAACATGGCGGACAACATGGATTCTTTCGGGTTTGGTTCCTCATAGACAATGTGAAGAAACAGAGTGAGGCTCGTGTGGCTCTTTAGTTCTTATCCTAAATCACAAACACGGATTTAAGTTAACCCTGCAAAAATGGTCATCCTTGGTCTCCAAAGACCATGGCACTGAACGAAGGAAGAATATTCATAAGTGGTTGTGAAGCCTAATATTTCTACCACATGTGCTTCAGGGAACTATCCTATTTTCTGGAAAATGTTTTTATTTTTGGTTCTACTGTAATCTCATAATTGAAAAGTATTTATATAATCTTATTGTCAGGGGCTTTTAATTTTTACAATAAAACTCCAGCTGAGTTGAAATTAAACATGCAGGCCCAAAGAATTTTGTGTTCTAGGCAAAATTTTTAAAGACCACTGAGGCAGTTTAAAAGCAGAAATAAAATACTGGGGAAAAATGCCACAGGCATTAAGGGAAGTGTATAGAAGCTTGAACCCAAACCCCTATGTCAGAGCTGCCCAGCCAAGCTGGGTCACATGGTGCTGGCACGCCAAACCCCCACCCCCCACCCCAGGCCCTCACAGGCAGGAGAAACTTTTTTCCCTGTACACAAAGGAAGCCCAACAGCAGGAGAACATGGCAGGAGTTTGGCATCTTGTAGTGAAGAAGCTGTGACTTGACAGAGTGAGTGTAGCCGGCAGGGAGGGTTGTCAATGCTTTGAACACAGGACTGCGGTTTTCTAAAGAGATGGATTTGAGGAGAATCTGCCACAGTATCCCAGTCAGAGAGAATGGCTCTCAAAACCAATTATGGTGTGGGACTCTGTGGCCAGCACACGTGATGAGCAGGAAGTTCCGTTTTCACCAATGTGTCATGTGATTCGACTGCTTCTCAATCATCACCATTTTAAATCGCTCTAAAAATCTGACAGCAAGGATTCGCTCCAGCGGGTATCACAAAGTCCTCTGGGGACACCTCACTGCTGCACAGACCTGGGTCGCCGACGTTCAGCCTGCAGTAACTGTGTGCTTTCCTGCAG
Seq C2 exon
GCCTACTGTGACATGGACATGGGTGGAGGAGGGTGGACGGTCATCCAACACCGGGAAGATGGCAGCGTTGACTTCCAGAGAACGTGGAAAGAGTACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696:ENSRNOT00000022774:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=68.2)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]