HsaINT1003626 @ hg38
Intron Retention
Gene
ENSG00000091879 | ANGPT2
Description
angiopoietin 2 [Source:HGNC Symbol;Acc:HGNC:485]
Coordinates
chr8:6514677-6519994:-
Coord C1 exon
chr8:6519864-6519994
Coord A exon
chr8:6514779-6519863
Coord C2 exon
chr8:6514677-6514778
Length
5085 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCTGCATTCCTGTTTGCAGGCC
3' ss Score
9.29
Exon sequences
Seq C1 exon
CAGCTAAGGACCCCACTGTTGCTAAAGAAGAACAAATCAGCTTCAGAGACTGTGCTGAAGTATTCAAATCAGGACACACCACGAATGGCATCTACACGTTAACATTCCCTAATTCTACAGAAGAGATCAAG
Seq A exon
GTGAGGTATTCGTCTCCCCTTACTAACTCCCTGGCTCTAGGCAGGCCACTTTAGTGAGTGAGGAACCAGAGAGCAGAAGTCTCTCCCCAAAGATCTTCCCCAGCCTCACACAGTACAAAGCCATAGTTACTGGGCAGCTACCTCGCCTAGAGTGCTTGCCAAGGGCTCTAAGTGCCGCTGCTGTGCAGAAAATACAAAAGCTGCATATGAATGATGTAGAAATGTCTATCTTATCTTCGGCAAGAAATACATTCTCCTTGCATTTTGCTTGAATAATGCATACTGTCAGTTGTTTTTCCTGAGGTGTCAGACTCATTTCCTTAAAGAAAGTATCTTCCAAAAACTGAAGGTTGAACAACCATAGTGCATCAGCCATAGAGGTGTCATGAAATTAATAATTTCTACTGCTGTGTCAAAGTCATTTTTCAGTGATATTATTGTTCCTTTCTTTTTTGTGTGTGACTGCATAGTGACTTGTACAGTTAGCTACCGCTGCCCTGCCTCACACGGGGATGGTGGCAGTTTTACCCACCATGGTTTTTGCTCTATCTGAGCAAACGCTAACACAGTGCCACAGACCGGTGGTGTCTTAGCATCGTGAAAACAGTTTCAACCTGTGGACTTGGTGACATGGTCTGAGGGACACGCAGGATTCTGAGGTCCACACCATGAGAACCGCTGGGGAAGGCGATTCTAACCTCATCTAACGCAGTCTGGAAGACTCGAAACACACCATAAAGACAGTGTTCATTTTCTTCTCCAGCAGCGGAGTTCACTTCAAGGCATATGTCCAATTACTGCATGTAACGTGAGTGGACAGTCAGTACTCACAGCAGGCAAAGCCACAACACAGCTTACCTCAGTCATTCCTAGTTCTGCAGCCTCACTCAGAGAGCCTGACTCCTGAAGGTGCTTTGGGAGACACTGAACTTTAGATAAGGAAAAAAAAAAACCCTTCCGGAGAATATTTCAATGTGGCTTCTCTTAAACATTTGATAGGGAAGAATGATATTACAGGAGAATCAGTGTGGTGAAGTGTTATGTAACTACTGGATAACTGTATATATTAAATGTCTATAAATATGTTTGCATATAAATGTAAAAGCAGCTACATATTGAACCAACACAAATAACTACAGAGAATACAGTGGATACTGTACCAAAGTGGAAATTTTCGAGGCTCTTGGAAGTATTATCTCTTTAAATTGAGTATTATCCTAAGTATTTAAAACAGTATCAAAGAAAAACACTTTAAAAATACAAGCATTAGGGTTTTAAAGACCTGGAACTTGAAACAGTAACATGTATCTTGATTATGAACGGAAAAGATAAATATTGTGCTATTCAACATAATGCTTTCCAAAGAAACCTTTCTAATTCATTAATGCTGTGTTAAATCAACCCTGAAAATTAGTTAATGTCCCTAACGCCCTAGAAGCCATACAACAGGGAAGGAAGGGAACAAACCCACAAACAACACAGTCTGCTGCAGATGAAAAGGCAACGAACAGACTCTAGGCTAAGCCTTTCAATCTCTTTTGCTATCTGGTTTTCATGACAATTCTGTGCATGCCATTGTCTGTCACCAGATGTTGGCGTGTTCTTGGCCTGGGGACAGGAGTGTCAAGAGGGGGGACAGAGGATGCATGTGAAATGGGGATGCCATGGACACCGATGCAGAGGGACAGCCGCTAACCATGCAGCCCCATCACATTGTTTCATCTATGTTTCTCAGTCTAAGTGCAAGCTTCCCACCCCAGTGCACTGTCCCACCCCATGGCCCCCAGAATAACTGAAATATTCTGCAGAAAGATGAAAATATATAGTACTCTGGGATTATATGAGCCTCAGGTCATGGTTGGAAACATTAGGATTTATATTCCCTTTAAACATTTGCAGTAAAAGAAACTCATTTACACAGCAGGGAACAATAAGCTTTCACAAACCTCAATTTTCTCATCTTGAAAAATAAGTGGTGTCAATTGTTACTTCTAAATTCCCTTCCAGACTTAAGACTCTGTAAGTCACAATCTGATCCAGGGAGAGATAGACAGACTTGGATGTAAATTCTAGCTCTGCCATTTGTGGCTCTGGGCGAGTCATTTAACCTTTCTGAGAGCTCAGTTTCCCCATCTGTAACAGAACAATGATACCCTCAGCCTTGGGGGTTGTGACAACACAGGGACAGCCCCTGGGGTAGAACTTGGGACAGTAAATGGTAGTGGTCACCATTTTCACTGCCTTCAAAGACTACCAGACAACTTCTCTGCCTGGCAGGAGACCCGATTCTGCACTCATTTATCTAATTCAAGAAAAGAATGTTCAATTGGTCTTTGAGCACATCTTTTCCTGAAAGGCCAAAATACTGCAGCTTTAGTTTTGAAAAATTCATTTGGTTCTTCTACGAGAGAGAGACTGCAAGATGGCATTTATCAAAAGCATGTATGGTCATTTCCTTCCCTAAATTTCACAGGACACCTGACTCCTAACGGTTGTCTCTATGGTTTGCTATTTAACCCGTCACTTAATCATTGCCTCAGAGTTGAAGCAAGTCAAGTATTATTTGCTGAAAAACATCAAGCTTTATAGAAAGATATCAGGTTCCTGCACCATGCACCAGTGGACAGATTAAAGATATTAACTGCCCTTAGGTTTGTTGTAATTGGAGTGGTAAGGTCTTGGGAAGTATCTGAGGACTTCTGCTTTGCTGATCCTGATATAATCAATTTCAGCACTTTTACTCAGTATCTTCTGGCTGGGTAGATAACTCTATTTGAACACTATCTTTCTCTGCAAGTTTTATAGTCCAATTAACCATAATACTCCAGTTTTTACAAATCCTCTGTTCTTTTTTCTAAAAACCTGGATGAAGTACTAAGAAAATGTTCTAATAACCTTATCATCATCACTAATGGAATCAAAGCGAATACTCATATGGCTCAAATCATTTATGTGCTGGCAGTGACTCTCAGACATTTAAGAGTTTTGCCTCTGACTTCCATAACAAGATAAACTTGTTCTCTGAACAAGATAGAACATGTATTTAAGTACTGGTAACTTCATAGCAGTAATTTTGACACTGAAGAATCAAACATTCTTGGAACAAGGATAGGCTCACCAAGAGCCACGTCAATGCTTTCAACCCAAGAGCATACCATTTAGGATACAGAATTAACTTCAATATATGTACATGAATCCTCAAACCAAAGTAGCTTATTCAGCTGGTTTATGAAATAGATTTTTAAAAAGAAATATTGATAGAAGTGAGCAGCACTGACCATTTTGTTGACTGCAGGCAAATAAGAGGCAGTATTATTCATGAACTGATTTAAACTTGGAACTGTGTTGAGGGACTTTTGGCCTATTTACCAAAGGGTCAGGTTTCTCTGTTTTTGGCAGCATGATGTCAGTGGAAAAAAAACATAACAGGAATCAAAGAGACCTTATTCAAATCCTATATATCACTTAGAAGGTGAGTAACTGATCAAAATCGAACTTTGCTAAATCTTTTCTCCTTTCAAAAATGCAGAATTATGATACTACAGCAGAGTTGCTGTGAGATTATAGATAATATACACAAAGTATCTGGCAGAGTACTTGGATGAGAGTGGTGTGTAGCAATGATAATAAAAATCATAGCAATACAGAGCGGTAACAAGGGGTTAGCTTGTGCAGACTGATTTTCTACATCAGATTAATTTAAAATGAGGAAATAATTTTCTTCTTAATAAATGTAACTTTCATTAATGGCACCTATGTTTCCAAACATGAGTGCCACTGGGGAAGGCAATACGAGCTGGGTGACCTTCCTGGAGAGAGACCAGAACCATGCTGGGGAGAAGTCCCCTGCAGACCAGGCTGTTCCAGGGACAGTTCTCTGGTTGCACTGGCAATGAGGCATCAGGCAGCCACTGCACTTCCTCTGCACCCCTCTTTCCTCATGTAGGAAATGAAAGAACAGGAATAGCACTCTCTTGGTTCTCTTTTCGCTCTCCTCTTTAGGATTCTAACTCGTAAACAGAGAACAGTGTGCGTTGAAGCTTACCCTGCCAAATCGCCTCCATTATTCTCAAAAAGACCATGGGACACAACACAAGAAGAATATTTACAATTGGTTTTGAACCTTAACTTCAATATTTCCTACCTTGTATGTGGCAGAAAATTTATCTTACTTTCTGGAAAACATGTTTCGTTCTACTGTAATCTTTATTATTTAAAACTATTTATGTAATCTTATTTTCAGGGGTTTTTAATTTCATAATAAAACTCCAGCTGAGTTGAAATTGAGCATGCATGCGCTTAGCTTAAGAAAGAATTCTGTGTTCTGGACAAAGTTTAAACCCACAGAGCCAGTTTAAGAGCAGAAATAAAAAGAGTTGCTTAGAGAAAAACTGTGGGCAGTGAGCTATGTACAGAGAAGCGTGAAGTCATGCCCTTGAGGCCAAGGTGCTAAGCCAAGCCCAGGTCACACACCTTGCACCAGGACACTGGAGCCTCAAGGCCCTTGTGCTCAGATGTGAACCAAAAAATCTGATTAGTATTGCACATAAAGGAAGCCAAACAGCCCCACAGTACGAGAATGTAACAGGAGTCCTCCAAACCCTATGATCAAAGAGTATCCCCTTCACATAGCTCTCTGTGGAGGGGCAGGGGCTGGCATTTAGTGAAAGGTTTCAAGGCTGTGAACACAAGTCAATGGTTTTCTACAGGATGGAGATGTGGGGTTCGGGGCCAATCTGCCAAAATGTGCCATTCATAATGAATCTCTAAAAAAACAGCAATCTCTGGACCAGCCATCAGGGTGGGGTCTTTAGCCTGGAACAGATGATGACAAGTGAGTCATATTCTCATCAACACTTTATATTATATTACTGTTTATGTTTCACCATCATTTTAATCCATCACTTTCAATTTATTTGAAACCATCTGTTTCTTAGACAACCCCGATGGTCTACTCCGTGCCTTATATCCCAGAGAACCCTCTCGGCTGAGTCCTGCACTCAGGGTCTACATTCCTCCTGCTTCTGCTACGTAAGGGGGGAGTGGGGGGGCTCTGTCACTTATACCCTGCATTCCTGTTTGCAG
Seq C2 exon
GCCTACTGTGACATGGAAGCTGGAGGAGGCGGGTGGACAATTATTCAGCGACGTGAGGATGGCAGCGTTGATTTTCAGAGGACTTGGAAAGAATATAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091879:ENST00000325203:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=68.2)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains