DreINT0029641 @ danRer10
Intron Retention
Gene
ENSDARG00000076787 | angpt4
Description
angiopoietin 4 [Source:ZFIN;Acc:ZDB-GENE-110104-1]
Coordinates
chr6:52020009-52020348:+
Coord C1 exon
chr6:52020009-52020121
Coord A exon
chr6:52020122-52020246
Coord C2 exon
chr6:52020247-52020348
Length
125 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
GTATCGTATGCTTCTGACAGGTC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GCATTACGCCAAATGAGCAGCGTTTCCGAGACTGTGCTGAGGCCTATAAATCCGGTCACAACACCAGCGGCGTCTACCACATTTACATCGGAGACATGACGGAGCCAACCAAG
Seq A exon
GTGTGGGATGCGTTCTTTCACAAGTATGGGGAATCAGTGCGATATATCCTGGCTGTGACATACAGAATGAGGAACAGCTTAAATGTAAGAGAGTGAGACTGAGACGTATCGTATGCTTCTGACAG
Seq C2 exon
GTCTTCTGTGATATGGTGACAAGTGGAGGTGGCTGGACTGTATTCCAGCACAGAGCCAATGGAAGTGTGAACTTCCAGAAAGGCTGGAAAGACTACAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076787:ENSDART00000156256:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=78.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTACGCCAAATGAGCAGC
R:
CAGCTTGTAGTCTTTCCAGCCT
Band lengths:
215-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]