RnoINT0017309 @ rn6
Intron Retention
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147445526-147447235:+
Coord C1 exon
chr3:147445526-147445641
Coord A exon
chr3:147445642-147447133
Coord C2 exon
chr3:147447134-147447235
Length
1492 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GTCGTCCCACCTCCCCACAGGTG
3' ss Score
12.13
Exon sequences
Seq C1 exon
TTTCCTTAAAGACGCCTAAGCCGCTGTTCCGGGATTGTGCAGAGATCAAGCGCTCTGGAGCCAACACCAGTGGTGTCTATACCATCCATGGGGCCAACATGACAAAGCCTCTCAAG
Seq A exon
GTTAGAGTTTTTTAGATATTGCTGAACTGGGGGCTTACAGACAGACCCTCCCACCCTGCCCCATCAACACTAGGCTTTATTCACCATCAGAGAGCCCAGAGAAGGAGGGATTCCTGTTCTGGAAACTCTCAGCAGGCAGGTTTCTAAGGGAGGGATGAAGCTGAAGTTCACAAAGCCAGCAGACTACCCTTGGGCACCATCTTCTCCAGAACCAAGCTTCTAGGCAGAAGGAAACTGTTCTATGTTGGTAAAGATGGCCGCCACTCATGTAAGTGATGGCCCTGGGCACACCTATTTTTCTTTGCCCAAGCAGGTTATTTCATTCACACACAGTCTAGGAGAAGTAGGCGTTGGGTCTGTGAAGTTGGTGATGGGCTGAAGGGGTGCCACCGTCCCATGAGAGACTCCGAGGTTGCTCGTTTGACAGTTCCCCAGCTGTAAGGGGGTCAGGGAAGTTTGAGTGTCAGGAACGAGGTTTGAGGCAGACCAGACAGAATGGGAGCACACATTCACATACCCATACACAATATGCACACACATAATCACACATTCACACACACATATATACACACATTCACACACATAAACAGCACATGCATATACATTGTACACATCACACACATACGTATACACTCACAAACACATACACACATTCACACACACATAAATACATACACACACATCACACACACACATATATATACTCACATGCACATATACATGCATTCACACACACAGAAATACACATTCACACACACATATATACACACACTTTCATACATTCACACACACATAAATACACACACATCACACACATTCACACATGCACTCACAAATCGCGCACATCACACACATATATACACATTCACACACACTCACACATACACATCACATACATACATATACACCCACACACATACACACCCACATTCACACACATCACATACACACACACTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATGCCACCATAATAATGTTTTGTCCCAGTACACAGTGCCAAGCAACTGTGCCCCAAAAATACTCTTAAGTCATGAGCAAGATAAGTCCTTCCTCCCTCAAGTTGTTTCTGTCAGGTGTCTAATGTGAACTTTGACCCTGGCTGCACCCCTGCAGTGGTAACAAATGAGAAGACCTTTCTCACATCAGCCTCTATTCTGAAATCCTCACAAAAATGCTGGTTTGCAGAGAACTGGGGTGTAGAGTTCTGCAAATGGGGAGGAGGCTCAGAAGGCATTAGTCACTGGCCTCCTTGAAAGACAATGACAGTGGGCAAGGAGTCTTCAGCTGGACTTTCCTGATGCCCTTGACCTCGGGTTCACTGTTGCTAGAGGAGGGCAGAGTTCAGCCAAGTTACACTGAGGCAGCCTGAGACTTGGCTTGTGGCCCCTCCAAGGGCTTCCAGCTGTGTCGTCCCACCTCCCCACAG
Seq C2 exon
GTGTTCTGTGACATGGAGACTGATGGAGGTGGCTGGACCCTCATCCAGCGCAGGGAGGATGGAAGCTTGAATTTCCAGAGGACTTGGGAGGAATACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008:ENSRNOT00000006786:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAAGACGCCTAAGCCGCT
R:
CTCTTTGTATTCCTCCCAAGTCCT
Band lengths:
214-1706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]