HsaINT0007987 @ hg19
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:860390-861929:-
Coord C1 exon
chr20:861814-861929
Coord A exon
chr20:860492-861813
Coord C2 exon
chr20:860390-860491
Length
1322 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
3' ss Seq
GCCTTGCCCACCCCCTCCAGGTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
CCTTCATAATGGCAGGTGAGCAGGTGTTCCAGGACTGTGCAGAGATCCAGCGCTCTGGGGCCAGTGCCAGTGGTGTCTACACCATCCAGGTGTCCAATGCAACGAAGCCCAGGAAG
Seq A exon
GTTAGGGGGCTCCCTGGGAACTGTGGCTGTTAGAGGGTGCTGAGCCAAGGGCTTCCCAAACAGACACCCCGCACCCCATCGGGATCAGGCTTTGTCCAGTATCTGAAATACCAGAGGTGTAGGGGTGGCTTTGACTTCCCAGCAGTCAGGGATCAGATTGTGGGGATAAGCAGAAGTTCCCAAAGTTGGAAGTGCATCCTTAACCAGCATCACTTCAGAGGTGCTTTAACTGGAACAGCACAAAATAGTTCAGTGTTGGTTAAGATGATGATAGCTGATATTACAAACAACCCCCAAAATTCCAGGGCCTTAGCCCAAAGACGTTTCTTTCTAGTTTACATATAGTCCAGTTGAAGGCAGGAGTTGGGGTTCTGCTCCATGTGGGAAATTAGAAACCAGGGCTAATAGAGGTGCCACCATTTTCAATCAGTGGCTCCCAAGGTTGTCCTAAAATTTAAGGTCAAGTCATCCGATAAGAAGGGTGACAGAGAAGAGCACGGATGTCAGGAGGGAGGGTCTGAGAGCCAGGCCTAGAAGGGAAACAACTAGCAGATTCCTACTTCATAATTCCCTTTTTTTTTTTGAGACAGGGTCTTGCTCTGGTGCCCAGGCTGGAGTGCAATGGCATGATCACAGCTCACTGCAGCCTTGACCTCCTGGGCTCGAGTGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACCACAGACACATGCCACCATGGCCTGGCTAATATTTTTAAACATTTTGTAGGGACAAAGTCTCCCTGTGTTTCCCAGGCTGGTCTGAAACTCCTGAGCTCAAGCGATCCTCCCTCCTCGGCCCTCAAATTGCTAGTATTACCATTGCTCTATTTCCTTTCACCCCCTCTTAATATACTAAGGAGAATGCCTCTGTTTGTCTCCAGGTTGTCTTTTACACTTCTCACACACCTGCTAACCTCTCCTTTCAACAAAAAGAGGTCGAGCTTCCGTTTACCTAGTACTGCCAGGCACTGTTCTAAACACTTTACGTGACTCATCTCGTTTAATTTTCACAACCCCAGTTGGTAGATGAGAGACTGAGGCACAAAGAGGTTAAGGTATGAATCTCCATTTTACAAATGAGAGGAAGGCTCTGAGAGGTCATTCCTTACCCACCACTTTAGAAAAATGATGACAATGGGTGGGGAATTTAAGCCTGGATCTTTCTGATGCCCAGGACCCCCAGGCTCACCTGTTGCTCTGTGGGGGTCTGTCTGCTTAGCCACATTTGGGCTAGCACAGGCCTGGCCTCTGGCTACCTCCAAGGGCTCCCAGCTGTGCCTTGCCCACCCCCTCCAG
Seq C2 exon
GTGTTCTGTGACCTGCAGAGCAGTGGAGGCAGGTGGACCCTCATCCAGCGCCGTGAGAATGGCACCGTGAATTTTCAGCGGAACTGGAAGGATTACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-ANGPT4:NM_015985:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCATAATGGCAGGTGAGCA
R:
TTGTAATCCTTCCAGTTCCGCTG
Band lengths:
214-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)