BtaINT0017844 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60762676-60764936:+
Coord C1 exon
chr13:60762676-60762791
Coord A exon
chr13:60762792-60764834
Coord C2 exon
chr13:60764835-60764936
Length
2043 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
3' ss Seq
ACCTTCTCAATTCTCTCCAGGTG
3' ss Score
11.23
Exon sequences
Seq C1 exon
CCTCCATGAGGGCAGCTGACCAGCTGTTCCAGGACTGTGCGGAGATCCAGCGCTTTGGGGCCAATGCCAGTGGCATCTACACCATCCATGTGGCCAATGTGACAGAGCCCAGAAAG
Seq A exon
GTTAGGGGGCTCCTTGGGGACTGAGGCTATCAGACGGTGCTGAGCCAAAGGACCCCTGCTCACCCCCACCTGCTCCCCACATTCACTTCAGGCCTTGTCCAACATCTGAGATCCCAGAGAAGGTAGGGGTGACCCAATCAGGGGTCAGATCATGTGGTTAAAGCAGATATTTTCTAGCTTGTTCCATGTGGGATATTAGGGACTGGGACTGATGGAGACCCTGAACTTTGAGGACCAGTTATCAAATGTGTGGAGGGAGCGCAGTCAAGGCAAAATGTGGATGTCAGGAGGGAGGGTTTGGGGGCCAAACCCAAAAGTGGAAGAGTTTGAGATATCCTTTTTAAGATGCATTCAGTCTGAGTATTTACTTAAGTGAAAAAAGACACCACTTTTAAAGTAAATATTTTATACGAAATTAAGTAAATTCAGCTATGGTGGGATTTTGGAAGTGTGAATAGCTAAAATTTGGGAACACTGATAGAGAGGGAAGAGCTGGCCTGGGAGGTAAGAGATCTGGGCTCAGACTTCAGCTTTACTTTGACCCATTCACCTTGAGCATATACTTTCCCCTTTCTGGACCTCAGTTTCCCTTCCTGCAACCTCTGCTACCCTCACAACATATACCACTGTCTTCTCTCCTGAACAGACCTTTAACATCTCAGAACCTCTATTCCAGCTACTCCCCTCCTCCACTGGAAATGCTATTTCCACTCATCTCTATCTGGCAGGCATGTCAACATCCAAAGCCTTGTTCCAATGCTACTCCCCTGGGAAGCCTTCCCGAGCTGTCCCTGACTCTTTCTTGGGAACTCATCTTGTAGCTGCCCAGATGTTCATATTCAGTAGTCTGCCAGCTGTATCAGACCTTCTAGCCATATCAGTCTGCTAGCTTCCTCCAGATCAAACCAGCCCTGGGGGTTTATTTATCTCTCATTTGTCTCTGATTTGTCTACTAATAATATGGGACTAGATACCAAGTATTTCCTCATCAAACATTGAAATCTACTGAACTGGCTGAAAAATTAATATGTAAACAAAAGTTAAACTGAAAGATGTGATTGCAATGGATGGTAAGCTCTTCAAAAGAATGAACTCTTTGTCTCATCCATATTGGCACTCTCTATGCCTTGGACTGCAAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGTCACCTCATGCGAAGGGTTGACTCACTGGAAAAGACTCTGATGCTGGGAAGGATTGGGGGCAAGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTCAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTGATCTGATCTGATCTGATCTGATGCCTTGAATGGAGCCTGCTACCTACTAAGTGCTCAGAAAACATTTGTCCACCAAATGTAATAACATTTTTTTTTTTTTTGGTATCTTGTCCCAACCGTGCGGCATGCAGAATGGTTCCCCGACCAGGGATTTAACCCAGGCCTCCATAATAAAAGCACTGAATCCTAACCACTAGACCACCAGGGAACCCCTGTAATAACATTTCCTGAGTCTACGCCATATATCAAGCACTTTACACCTCTTGGCATTTCATTTTTAAAGGAACCCTGCAATAATAGTGAATGAAAAGCCTCCGTTTACTGAGTTCTGTTCTTTAGATGGATGACTCATCTAGTTCTCACGACAATTCCATTGTGCAGATAAGAACCTAAGGCACAAAAAGATGAAGGTATTAGCATCCTCGTTTGACAAATGAAGAAAGGAAGGGTTTGGGCCTGGATCTGTGCGATGCCCTTGACCACCAAGCTCACTGTTTGCTTTGTGATGTTCTGTCAGTCAGATGACCCTCATGCTGGCCCAGACCTGGCTTCTGGCTGCCTCCAGGGGCTTCCAACTCCCCACCTTCTCAATTCTCTCCAG
Seq C2 exon
GTGTTCTGTGACATGGAGGCCAGTGGAGGTGGGTGGACCCTCATTCAGCGCCGTGAGAATGGTAGCGTGAATTTCCAACGGAACTGGAAGGATTACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811:ENSBTAT00000029073:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development