MmuINT0015012 @ mm9
Intron Retention
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151760143-151762504:+
Coord C1 exon
chr2:151760143-151760258
Coord A exon
chr2:151760259-151762402
Coord C2 exon
chr2:151762403-151762504
Length
2144 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
GTTGTCCCACCTCCCCCCAGGTG
3' ss Score
11.62
Exon sequences
Seq C1 exon
TTTCCTTAAAGACACCTAAGCCAGTGTTCCAGGACTGTGCAGAGATCAAGCGCTCCGGGGTTAATACCAGCGGTGTCTATACCATCTATGAGACCAACATGACAAAGCCTCTCAAG
Seq A exon
GTCAGAGGTTTTGAGATATTGCTGAACTGGGGGCTTCCTGACACACCCACCCTCACCCTGCCCCATCAACACTAGGCTTTATCCACCATCAGAGAGCCCAGAGGAGGAGGGAGCCATGTTTTTGGAAACTCTCACCAGGCAGGTTTCTAAGGAAGGGATGAGGCCGAAGCTCACAGAGCCAGCAGTCTACCCTTGGGTACCATCTTCTCCAGAAACAAGCTTCTAGGCAGAAGGAAACTGTTCGATGCTGGTAAAGATGGCAGCCACTCTTGTAAGTGATGGTCCTGGGCACACCTATTTGTCTTTGCCAAAGCAGGTTATTTCATTCACACACAGTCCAGGAGAAGCAGGAGTTGGGTCTGTGAAGTTGGTGATGGCCTAATGGGGATGCCACCATCCCATGAGAGGCTCCAAGGTTGCTCTGAGTTTGACAGTTCCCCAGTGATAGGGGGTCAGGGGAAGTGCAAGTGTCAGGAGCAAGGTTTGAGGCAGATTTCAGACAGAATGGGAGCAAACATTCCTATGCCCATACACACACACACACACACACACACACACACACACACACACACACACGTAGGGTTATGGGTCCCGCATCTGCTCTGCCACAGGGCTTGGCCACTTGGACATGGGAGTTGACCTTGACCACACTTACCCCAGGCTGGGTGGGTGTTGGGCTGTAGAGAAGCCCCAGAATATTGCTCCAGAGGTGGGGAAGCACAGTCTGTGGCTAGAACTGGTTTGGGGGTCCCCAGGCCTGCAAAGAGGCTGAGGCCATCTGGTTCTCAGGCTCTTAGACATCCAGGTGGAGCTGGAAGACATGGAAGACCTGAGAACAGAGTGGGGGCCTGCGGGCTGGTTCTAGCCCAGGGCCAGGGGGAAGACACGTGGGGGGGGGGAGAATCAAGCTCGAGCTGGTCCTGCAGGGGAGTCCTTGGCTTGAAGGCAGCTGCAGGCTTGGGCTTGCGCTTGGGGGCAGCCATGGCTGGGAGCACAGAGAGGCCTTCTACAGTAGACTAGATGGCAGCTCTATAGCCAAAGGCCTTCTCCATGGCTCCCCACTGCATATCCCAATGAAAAGAGGCAGACCATGGTTTTAAGTCATTTATTGTCATGACGGAAAGTAGATGTATAAAACCATACCCACTTCTCAGGGCGGGCCTGAGGTTAAATACCTTTTGCAGGGAGGAGAATCTGGGAAGGAAAGCTTATTGGCTAAGTCCTTCAGGCTTCTAGGTACCTCATTAAAATGGAGATATGTCTTGAACCTATATGACCACAGGTCACATCTTCTACATGTGGAAGGGCTTGGGGCGTTGCCCTTATGTGACTGATAGCCACAAATCTATTGGGGGGGATGCTGCAGCTAGTGACAGGGGCCTGATACCCAAGAACAGCTGAAGCGCCTACTGTCCCTTCAGGGTTTCAGAGGCTTCAAGCCTTAGCTCTACCATGGACCAAGCTACCTTTCACGGTCCCACTCACATACACACATACACATACGTAAACATCACACACATATACACTGCACACATCACACAAATACATATACACTCATACCCACATAAATACATACACATCACATACATATACACACTTTCACACACTCACAGACATACACATCATATACATACATATACACTCATACACACACACATATATACATACATACACACTCACACTCATGCCACCGTAATGTTTTGTCCCAGTGCAGAATGCCAAGCAACTGAAATGCTCTTAAGCCATGAGCAAAATAAGTCCTTCCTCCCTCAAGTTGTTTCTGTCAGGTGTCTAATGTGAGCTTCGACCCTGGCTGCACCCCTGCACTAATTAATAGCAAATGAGAAGAGCTTGCATGTGTCAGCCTCTATTCTGAAATTTTCACAATAATGTTGGTTTTTGCAGTATAAGCATCCCTACTCTGTAAATGGGGAGAAGGCTCTGAGAGGGTATCACTCACTGGCCTCTTGAACAGTGATGACAGTGGGCGGGGAGTCTGCGTCTGTGCTTTCCTGATGCCCTTCACCTCCGGTTCTCTGTTGCTAGAGGAGGACAGAGTTCAGCCAAGGTAGATTTAGGCTGCCGGAGACTTGGCTTGTGGCCCCTCCAAGAGCTTCAGGCTGTGTTGTCCCACCTCCCCCCAG
Seq C2 exon
GTGTTCTGTGACATGGAGACTGATGGAGGTGGCTGGACCCTCATCCAGCACCGGGAGGATGGAAGCGTAAATTTCCAGAGGACCTGGGAAGAATACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460-Angpt4:NM_009641:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: