GgaINT0088320 @ galGal3
Intron Retention
Gene
ENSGALG00000016330 | ANGPT2
Description
NA
Coordinates
chr3:91442664-91446804:+
Coord C1 exon
chr3:91442664-91442830
Coord A exon
chr3:91442831-91446673
Coord C2 exon
chr3:91446674-91446804
Length
3843 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCCATTCCTCACTTCTACAGGAT
3' ss Score
9.83
Exon sequences
Seq C1 exon
GGATTTGGTGATCCTGCTGGGGAGTACTGGCTAGGAAATGAGTTTGTTTCTCAACTGACTAATCAGAAGCGCTACGTTCTTAAAATAATCCTGAAAGACTGGGAAGGAAATGAAGCGTACACTTTGTATGACCAATTCTATCTAGCAAACGAAGAACAAAAATACAG
Seq A exon
GTAAGCAGAAAAATTTGAACTGAATTTAAAAAATGAGCTGGTGATTATTTTAAACTGTGTACATGAATTACATGCTTGCTCTATTTTAACCTGCTCCCTGTAGCATTCAAAAAAAAACCTTTATTTCAAAGGAAACAATGTACATTTACTAGCGCACACTGGCTGAACATAAAACAGATGCATGAAGATGAAGAGATGGTATGGTATAATATCAGATAAATATACCAATATAGCAGATGGTAGTACCCAATTTTCAAGAATAAGAACACATCTGCAGTTGCAGAGAAAAGAAGGGTATAAAAAAAGAGATCCTGTGTCCATCTTTTACTCTGGGCACGAAGATCCATCCAAGTATATTCTTAACAGAGAATAATAACAGCTATCTACAGTGATTAATGCATTTACGTATGCACATGATAACCCTTAAAGTTCAGCAGTAGATAGGGTGGGGGGGGGGATGGGCTGGTTTTCCCTGATAGGTTTTTTCTTTCTTTAAAACACACCATGGGCTAGTTTTTCAAAGAGAACTTTCAGATAAATTTAACTTCTAGATTTGCTTTTCCTCTCATCTGAACAGAATTTTACTTCTTGCAGCTATGTAACTGTTATTCACATTTTAAAGATATATTACTGAATTCTATTACTGAATTGTCTTTAAATGGTATGGCTTAGACTACTAGTTAGATGTTTCTTTATCAGAACAAAATTACAATTCCTGTGTTTTCAAAGAAAATTCTAAGCCAACTCTACCCTTTAGAACTAATGTCTATCACTGTTATTGACTTAAAAGTAAAACAAAAAGGGAAACTATTTGCTGGATTAATGTTGCAGATGGCTTCAAGAATGCAAGAGAATATATAATCATGATTCCAAGCAATAAATAGATTTCTGGAAAGTGGTTGACTGAGACAGACAAGACTTGAAGGAGATTTTCTACTTCAGTTAGTTGTTAGTAGAAGCGTTCTGAGCACAGTAATGTTACCTTATTGTTCCACAATCCACTGCCTTGGATTCTCTAAGAATAATGCTCCTACGTATGAAAAAGTTAATACTGAACGTCCAGTCTCATTCCCTGTAAAACTGTCATTTTAAAATCATTTTTTATTGCACATTTTATTTATGCTCCCATTTCATTGCAAAATGAAAGCTTCACATTTTTTCATACCTGTTTGGTTAGAAATGACACATTATCAAAGGATTATACATTTTAAAATAGTATCAGTCATAACTGAAATATATGGGCAGTTCTTATTTCATTCTGCAGGACCTCTGTCAAAGCAGTACGTGTGGTATTATTAGATGAAGGAGAACTAGAGCGTATAGAATAACTGATAATTTCCTACTGCATGGTCCAGGAAATGTTTTTTCATAAGAATCTTGCAGATTCACAAAGCTGGATAGAGAAAAATATCTATTTTTAGCTACATTTCTCCAAGATCCCTTAACATCTAGTCGATGTAAACAAAGTCAATCTGACACCCTTGAGAACTGAAGCTGTTACTTCAACTCAAGTCTTCCATGCAAAGCAATCTAAAACTATCAGTATCTCCATCCCTCTGAATGTATGGTCTTAATGCCTTAGCAGTACACAGCTGTCTCATTTCCAAAGCAAATGTTTTTTCATCTGGGAACAGTTAGAATCAACAGCAGAGACTTTTTTTTAAGTAATGCATTAAAATACTTACAAAACAAGTTTTGTGAAATAGGTCATTGCCCTTGTCCAGTTACATTTCTAAAAAACAATCACTGAAAACTAAGATGACTGTCAGTAAATAGATCCTTTATTTTAAAATGCAACCAAACATGGAATGCATCATAGACACAGTGGTTTAAAGAATAGAGTAATATGAATAAAAAAAAGGAAGAAAGCGTTCAAAGGCAACTTTCATTACATTGAAAACATTAAAACATCTCAATGCTGGAAGATCATGAGTTGGTTCATAAAATTAAGATTTCATAGAACCATAGAAGAAGTGGATTCAGAATGAACTTGTTCTGAGGCCAACTACTTCATACCAGGCTAGGTTGCTCAAGGCTTTGTTGACATGGGCCTTCATAACCTCCGAAGATGGAGGCTGCATAGCCTGTTCCATTGCTCACCTATCCTCAGGGTGAAAAGTTTTCCTGACATCTAGTCAGAATTCCTCATTTCAACTTACATCCATTGACTATAATCTCCTGTTTTACTAAGCCATATTTTTTAAAAACCACTGAGATGAATAAATCTTAGCTTCCATTGTACTTCAAATAATACTTGCAATTCAGGCCTAGGCTCATGCTTTCTGCTCAGAACATTTAGCCATATCTTCGAAACTGGCTTACAGGGACCAGTGTTTGAATATAAAGCTTTAAACTCACCTTTAGAAAAAACAAGATATTTAACTTTGAGATTTTAGAGGAAGATTGTAATGAGCTAATCTTTGGGAATTCATCTGTTCTCAATATATTCACATAGAGAATATAAAATTGGTTAAAACAATCTGTCAAACTACCAAAACCAACATCAATCATAAGCAGAGAATGACGTGCAAAGTCAAGACCTATCTGGGGAGAAGCTGGTTCTCTCATACGTAGAGTAGAATAACTCTGAGAAGAGTAAGATATTTGATGCAGAAATGCAATCAGCAAAAATTAATATGGGGGCAGAAGTTCAAATCCACTTAGTTCAACACACACACAATTTCATAACATGGTCACAGCTGTGTAACTGCCTCCCACGTTCAGCACCCCAATATCTCTAGCCACTAAGATGATCAAAGGGCCAGAGCACCTCTCCTATGAGGAAATGTTGAGAGAACTGGGCTTGTTTAGCTTGGAGAAGAGAAGGCTTCGGGGAGACCTCATTGCAGCCTTCCAGTACTTGAAAGGAGCATATAAACAGGAAGGGGAATGGCTGTTTACAAGGGTGGATAGTGATAGGACAAGGGGGAATGGTCTTAAACTGAGACAGGAGAGGTTTAGGTTAGATATTAGGAGGAAGGTTTTCACCCAGAGGGTGATGACACACTGGAACAGGTTGCCCAAGGAGGTTGTGGACTCCCCGTCGCTGGAGGCATTCAAGGCCAGGCTGGACGTGGCTCTGGGCAGCCTGGTCTAGTGGTTGGCAACCCTGCATGTAGCAGGGGGGTTGAAACTGGATGATCATGTGGTTCTTTTCAACCCAGGCCATTCTATGATCCTATGATTTCTACCCCTGTGAGTGCATCTCTATCTGCATAAGCAGGTACAGACAATATACAATTAGATATAAGCAGATACAAGCTTAACTTGCCAGGTAAGTGAAACAAACTGTTAAATACTTGTGAAGATCCAACCTAATGAAACCTATGGACGTTGTGAAAATAAAGAATAATTTGGAAAGTGGAAAATGAAACATTTAGAAGATCCTAAAGCATCAGTTACTCGTTGGTATTTGAGAGTCCAGGAAATGTTCTTATCTCTCGTAACTGCAGAGTTGTAATGCTGGATTGCCATATTGTGTTAAAAGCAAAATAGAAAGAAAAAAGGTTTTTGTTAGGCTTTCAAACTTAATTAAAAAAATGCACACAATGCACTTAATAAAGAAACATTAAGAAATTATATACAAAAAAAGTTTATAATCTGCTCGTTTTCTTCTAATATGACATGAAAAAAATGTTCATCTCTACTGACAGAGGCTGTTCATCAAGATACTGTGATGAACTTTTCCACTCATGAAAAATTGCTGTGAAACCATTCACAACAGTACATTAGCTAGAAGTGAACTGAGCTATTTGAACAGGATACTTACTGCAAACTACTTCATCATTATTTTCTAACTCAACTTCAATGTAATATTCGTCTTTCCATTCCTCACTTCTACAG
Seq C2 exon
GATCCACCTTAAAGGACTTACTGGGACAGCAGGCAAAATAAGTAGTATAAGCCAACCAGGAAATGATTTTAGCACAAAGGATGCAGACAATGACAAATGTATTTGCAAATGTTCACAAATGCTAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330:ENSGALT00000026341:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]