MmuINT0015006 @ mm9
Intron Retention
Gene
ENSMUSG00000031465 | Angpt2
Description
angiopoietin 2 [Source:MGI Symbol;Acc:MGI:1202890]
Coordinates
chr8:18694397-18698210:-
Coord C1 exon
chr8:18698044-18698210
Coord A exon
chr8:18694528-18698043
Coord C2 exon
chr8:18694397-18694527
Length
3516 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTCCTTTGCACGTTCCAGGAT
3' ss Score
7.98
Exon sequences
Seq C1 exon
GGCTTCGGGAGCCCTCTGGGAGAGTACTGGCTGGGCAATGAGTTTGTCTCCCAGCTGACCGGTCAGCACCGCTACGTGCTTAAGATCCAGCTGAAGGACTGGGAAGGCAACGAGGCGCATTCGCTGTATGATCACTTCTACCTCGCTGGTGAAGAGTCCAACTACAG
Seq A exon
GTAAGCAAGTTGTCATGGAGCCACGACTGGGTCACACGGAACTGCTGCTTCTCGGGGGCATCACCGTCTCTCAGTTCCTCTAGTTTCAAAATCCTAGCTTTGGCTAGAGATGTTAACTCACTGGAGTAGCACTTGCCTAGCATGGTCAAGACCCTAAACCAGTCCCTAGGACTGAAAGATGAACAGATAGATCACTGAGACAGACAGGCAGATCATAGCTTTCTACCTGTGGTTAGACAATGTGCAGAAAACTGGGAGGGCAGTTTTGCATCTGTTGCTTTCCTGTGTGTGTTCTGAGTGGAGAGGCTTCTCGACAGGCCGTGTGTAATGAGATAGCCGTTTGATAGATACGGTATGTAAGGAGAGACAGACACCTGGGGCATACTGTCTTCTTACCTAAGATATTAAATTAAAAGTTAGCCCGTGTTTTGAAGGTCAAACACAGCTAACAGTTGTGCTCAGTCCCAAATTAAGATGCAGAACACACATCTGAGTCACAGCACCTCCTTGGATGTCAGCTCATCCCCATCTGGCTGCTGACAGTAATCTCACATGTTCCAAGCGCATGGGCGAGCCTGACAGCACACTCACCCGCTGGCTGGAAAGCGCTGTAAGGGAGGAGAACACCAAGGACTTGGCTTTCTGTGTGGACAATGAAAGCCATGGCTGAGGTGCTGGAATCTCTCTACACGGTGCTACACTCAAATCCAGGTCCCACGGGAGCATTGGTCAGGAAGCTCATGACAGTGGCACCAAAGAAGCAGGTGTGTGAGCCCAGCGGGACGCAGGCATCCAAACAATGTGGGCACCCACTGCTTGTGTCCACAGAGCACAGAGCAGGCCCGAGAAGCCACAGAGGACAGATGACGCACAACAGGCCCTCCAGAAACAAAGTCATGGCCCACAGTGCCACCCCGATCTCAGTGGCGCCCAGGCCCCGTGGAGAAGAAGCTTGACTATAACATCCTGGGCTGGTGTCCTAGGGAGGTCACAGTGGACAGCACAGGGAAGCCAGCTCAGAGCCTGGGGTCTGACCTGAGAGCGACATGCTGCCAGGAACAGTCTGCTTTTCACAGACAGTGGGTGTCGATTCCTCCGAAGCTGTTTTCAAAGCAGACAGAGCCTGTTGTGACACTGGAATGGTCGGTGACCTTTTAGAAAGATCAGGATTCCCTGGAGGGGGTGCATGGGAAGACAAGCAGGACCCCAGCACCCAGACGGTCTTGCTGGACTCCAGAGTCCAGAAGTCAATGGATCCCAAGGCACAGTGGTCTCCATTGTGCTATCTCCAAGCTAAATATTTTCTTAACTGGCAGCAGTTAGGAATCTACAATAGAGGAATTAATTTTTTTAAAGAAAGAAACACAGAGATGAAGAATTAGCCTGTTTACATAAGGAGATTTTACTACATGGGTCCTTACCCTTCCACAATGACATTATAAAAATAGTGTAAGCTAAGGTTCTTTTGGAAATGCAAACATATTTTGAAGATGCTATTTGAAAAAACAACAACAACAAAAAAAATCCCCACTGGTTTTTGAGGCTTAGTTTACTTGGAAATGTAAAACAATAATAATCCATAAAAACTTGCTACACTAATTAAGAGGATGCTAATACGGCTAAGTACTCTGGAAGTAACGCCTGAGTAAGTGCCGAGTAAGCCAAGCTTCAGATTGGGACGTGCTTCCCTCCAAGAACAAGCAGGAAACCAAGGAGTGCATGAGAAAGGGGCACCAAGGAAGACATGTGTCTGCCTGCCTGCCTGCTCACACCCTGCCACCCCATTCTCCTTCTTTCTCTTGATTCCCAAGACAGGGTCTCGTGTAGCCCGAGGGAGTCTTGAAATTGCTACGTAGCCAAAGATGACGTCAAACATCTGATCCTCCTGCCTCCACCCCTCAAATGCTAGGATTGTAGGTATGAGCAATGACATGGCCAACTCAAGGCTGTTCTTAATAACAGATTTGAAAGCATGTACTTTTGTCTGGTAGGCCTCCAAAAGGCTCTAAGATTGAATAACCTTTCAAAGAGAGACTAATAAAAATAGATTTCTCTCTGACATTACTTGCCTTTGCAGGACATTTAGTGAGTCCCCTGAGAACTGACCTTTCAAAGAAGACAAGAGACTGAAAAGGAAGACAAACCTTGGCGGGGAGGGGTGGGGTGGGGTGGGGTGTGGTGGGGTGGGGTGGAGGGGGTGTAAAGGGGGGTAAATGTCAGAAAGAAAACTATTTCAGGTTCCCAAGCACACAAGGACTAGTTCTCCACACACTGCAGCTGCTGTCCTAGGGCTGCCGTGAGCACTCACTGTAAAGACATGTGCCAGGGCCTGGGACAGTGGTCTCGCCCTCTCCTCTGCCTGTTCCCACATGAGATACTGACAAGTGAATCTTCCCAAGGTGGTGGATGGCAAGGACAGAGAGCTTTACAAAGAAGAGAACACTTGGGGGCTCAAAGGACACTTGGTAGTCACCATGTAGGATTTCCAGAGACTCCTGTATCTACATTGCATGAGCTCTTGGGGATTCAGCATGATAGTTTGCCAGAGCTGGTTACTGGCATGCCAAAACACCAAAAGGACATCCTTACGTCACCCTATTATGTGAGACCCAGCTCTGGTCTGACTCGAAACATCTGACCACTGGCAGTTTGTGACATTTTAGAGAATTATATGTTCTGATTGGGCATGGCCATCCATGACTGTAACCCCAGCACTTGGGAGGCTGAGGCAGGTGGACTATCACAAGTTCAAGGTCAACCGAGGCTGCTTAGTGAGTTCCAGGCCAGCTTAAGCTACAGTGTATATAACCCTGCCTTAAAAACAAAACAAAATAAAATAGTAATTAAAGCGATTATGCTTATCCTGACCTTCAGATTCTCCTTGTTGGCACAGTTGGCTGCTGAGGACCACACTTTGGCAACAGTCTAACAGTGTGGTCCATGATCAGGGGTCTGGGCACTGACATTTACTTCCTTTCTGAGGTCAGACAGGTTTATTATACCAGTGTCCAGAATCAAGGCAAAGCAGCTATAGGGGCTACCCCAAACTCCTCACCCACTCCTTGCCTTCTAGCCTCTCCACCCCAACTTCTACCCCTTCAGACTATAGACAGGGTATCTGGTCACTCTAGTAGCCATTCCCCAGGGACTGTGGTGGTTGGGGGCGGGGAGGGGGTCTGTGAGAAGCCCCTTTGTTCTGCAGATGCCTTCTGTTCATCTGAATGCAGAGGGATAATGAATTACAAGGCCCCATTAAGGTCTGCTGATGCTGGTGCAGGCAATATGTGTTGAAGTTGTCATGAAAACATCCCTCCCTCTTTGTCAGAGGGTTTGATGATAAGTTGGTTCCTGTTTATACCAGTACAAAGTATTTTGTACGGAGTGGGCACTGGAGTGTACTGACTGGCCCCAGTGCACTCTGTAGAATGGAATTCTTCACCATGAGAAATTTTCCACTACAGTCAATCAACAATCCTAGCCAGTTACAATTTTTATTTTTTCCTTTGCACGTTCCAG
Seq C2 exon
GATTCACCTTACAGGACTCACGGGGACCGCGGGCAAAATAAGTAGCATCAGCCAACCAGGAAGTGATTTTAGCACAAAGGATTCGGACAATGACAAATGCATCTGCAAGTGTTCCCAGATGCTCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031465-Angpt2:NM_007426:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: