RnoINT0017303 @ rn6
Intron Retention
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:76010124-76014038:+
Coord C1 exon
chr16:76010124-76010290
Coord A exon
chr16:76010291-76013907
Coord C2 exon
chr16:76013908-76014038
Length
3617 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTCCTTTGCACGTTCCAGGAT
3' ss Score
7.98
Exon sequences
Seq C1 exon
GGCTTCGGGAGCCCTCTGGGAGAGTATTGGCTGGGCAACGAGTTTGTCTCCCAGCTGACCAGTGGGCATCGCTACGTGCTGAAGATCCAGCTGAAGGACTGGGAAGGCAGCGAGGCACACTCTCTGTATGAGCACTTCTACCTGTCCGGCGAGGAGTCCAACTACAG
Seq A exon
GTAAGTCGCCACGGAGGGAACCGGACCGCCTTTCTGTGTCATTATCCCAGACTTTCATCCAGCCAAGATCCACAGCCAGGTCACATGGACTGCTGTTTCCCAGGGCCACTGTTGTCTCCCAGGTTCTCTAGCTTTAAGATTCTAGCTTTGGCTAGTGCCATGACTCACCAGTGTAGCACTCCTCTAGCACGGTCTCGACCCTAAACTCGGTCCCTAGTGCTGAAAGATGAGCAGACAGATAATTGAAACGGATGGGCAGATCATAGATTTCTACCCGTGGCTAAACGATGTATAGAAAACTGTGAGGGCGTTTTTGCATCTGTTGCTTTCCTGTGTGTGCTTTGAGTGGAGATGCTGTGTGGCAGGCCGTGTGTAATTCACAGCACCCCGCAGAATTAGTGAACACGAGATAACCCTTTGATAGATACCGTATGCAAGAAAAGACAGACACCGGGCCGTACGGTCTTCTTAACCTAAGATATTAAGTTAGCCTGTGTTTTGAAGGTCAATCCCAAATTAGGAAGCAGAAGGCACATCTGAGTCACAGCCCCACCTCAGCTGTTGGCTGGGGGCAGCTACTGCAAACGCTCTGACGGCACAGTGCTCTCAGGCTGTAGAGCACGGTTAGGGAGAAGGACAGCAAGAACTTGGCTTTCTGTGAGGGTCAGAGCCACGTATGAAGTGCTGGGATCTCTGCATGTGGTGGTGCACTCGAATCCAGCTTCCAAGGGGGTGTTGGTCAGGAAGTTGGATGGTGTCACCAAAGAAGCAGGTGTGAGCCCAGCTGGATGCAGGTGTCCAAAGAATGTGGGCACCTACTGCTTGTGTCCACTGAGCACAGAGCAAAAGCGCCTGAGGCCACACACGACAAATGACGCACAACAGGCCCTCCACAAACAAAGCTAGGGCCCGCAGTGCCACCCCTATCTCAGTGGCGCCCAGGCCCCGTGGAGAGGAAGCTTGACTATAACGTCCTTGGCTGGTGTCCTAGGGAGGTCACAGTGGACAGCGCAGGGAAGCCAGCTCAGAGCCTGGGGCCTGACCTGAGAGCTACGTGCTGCCAGGAACAGTCTGCTTTTTACAGACAGTGGGTGCCGATTCAGAAGCTGTTTTCAAAGCAGACAGAGCTTGTTGTGACACGGGAATGGTTGGTGAAGCAGCAGTGACCTTCTAGAAAGATTAGGATTCCCTGGAGTGGGTGAATGGGAAGACATGGTTAAGACCCCGAAACCCAGAAGGTCTCGCTGGACTCCAGAGCCCAGAAGTCAATGGATTCCAAGGCACTGGGGTCTTCATTGTGCTATCTCCAAGCTAAATATTTCCTTAACTGGCAGCAGTTAGGAATCTATAATGGAGGAATTAAGTTTTTTAAAGAAAGAAACACAGAGATGAAGAATTAGCCTGTTTACATAAGGGGATTTTACAACATGGGTCATCACCCTTCCACAGTGATACTATAAAAATATTGTAAGCTAAGGTTCTTTTGGAAATGCAAACATATTTTGAAGATGCTATTTGAAAAAAAAAACACTGGTTTTTGAGGCTTAGTTTATTTGGAAACATAAAATAGTAATACTCCACAGACACTTGCTACACTAATTAAGAGGACGGTAACACAGTATGCAACCATAACTAACGCTTAAGTGCGTGCAGAGTAAGGCGGCCTCAGAACCACTGTGCTTCCCACCAAGGAGACAGCAGGAAACCGAGTGTGTATGAGAAAGGGGCATGCAGGAATGGGAGCCTGCCTGCCTGTTAACACCCTCCCTCCATCTTCTCTTTCTTTGAATTCCCAAGACAGGGTCTCATGGCTCTCAAGCGAGCCTCGAACTTGCTATATAGCCAAGGATGACCTCAAACTCCTGACCTCCTGCCTCCACCGCTCATGAGCTAGGACTGTAGATACCGGCAAGGTCTTGGCCAGCTCAAGGCTGTTCTTAGTAACAGATCTGAAAGGATGTACTTTGGTCTGGTGGGCCTCCAAAGGCTCTAAGACTGAACAGCCTTTCAAAGAGAGACTAATAAAAATAGCTTTCTCTCTTGTATTACTTGCCTTTGCAGGACATTTAATGAGTCCCCAGAGAACTGACCTTTCAGAGATGAGACTGAAAAGGAAGACAAGCCTGGGGGGAGGGCTGAGTGGGGGACGGTGAACGTCAGGCCTGCCTAGGCTTAAGGAGAAGGACCAGGAAGAAATGTGTTTCAGGTTCCAAAGCACATAAGAGCTCGTTCTCCACACGGCAGCTGGGGTCCTGGGGCCACCATGAGCACTCACGTGCAGACATGTAGCAGAGTCCTGGTCTCTCCCTCTCCTCTGCCTGTCCCCACATGAGATACTGACAAGTGTCTCATCTCATTAGCTCATGGGGACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGTACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGGACTCAGCTTAGCTCATGGGGACTCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGGACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCTTAGCTCATGGGCACTCAGCATGCTAGCTTGCCAGAGTGGGCTACTGGTATGCCAAGGCTCCAACAGGACATCCTCACGTCACCCAATTATGTCAGACCCAGTTCTGGCCTGACTCGGAACACCTGACCACGGGAGGTTTGTGACAGTATTGTGATATTTTAGAGAATTATATGAACTAAATGGGCGTGGCTGTTATGACTGCAACCCCAGCACTTGGGAGGCTGAGGCAGGTGGACTGTCACAAGTTCAAGGTCGACCTAGGCTGCAGAGTGAATTCCAGGTTTAATTAAAGCGATTACACTTATCCCGTCCTTTACACTATCCTTGCTGGCACAGTTGGCTGCTACAGGCTACACTTCCGCAGTAGTCTAACAGTGTGGCGTGACCAGGGGTTAGCGATGACATTTTCTCCTTTCCTGAGGTCGGACGAGTTTATTATACCAGTGTCCAGAGTCAAGGTGCAGCACTATAGACTCCTACCCCAACCTCCTCGCCCACTCCTCGTCTTCTAGCCTTTCTACCCCAACTCCTACCCCTTCAGAGCAGAGAGAGCAGGTGGTCTCTCCAGCAGCCATTCCATGGGGACAGCGGTGGTTGGGGGTCTGTGGGAAGCCCCTTGTGCTGCAGACCCCTTCTGTTTATCTGAATGCAGAGGGAAAATGAGCTAAAGGGCCCATCAAGCTCTGCTGATGCTGGTGCAGGCAGTATGTGTTGAAGCTGTCCTGAAAACATCCCTCTTTGTCAGAGGGTTCGATGATAAGTTGGTTCCTGTTTATACCAGTACAAAATATTTTGTCCAGAGTAGGCACTGGAGTGCACTGACCGGCCTGAGTGCATTCAGTAGAATGGAATTCCTCAGCACGAGAAACTTTCCACTACGGTGAATCGACAGTCCTAGCCAGTTACAGTTTTTATTTTTTCCTTTGCACGTTCCAG
Seq C2 exon
GATTCACCTTACAGGACTCACAGGCACGGCGGGCAAAATCAGTAGCATCAGCCAACCAGGAAGTGATTTTAGCACAAAGGATTCGGACAATGACAAATGCATCTGCAAGTGTTCCCAGATGCTCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696:ENSRNOT00000022774:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]