GgaINT1006108 @ galGal4
Intron Retention
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10242764-10243480:+
Coord C1 exon
chr20:10242764-10242930
Coord A exon
chr20:10242931-10243349
Coord C2 exon
chr20:10243350-10243480
Length
419 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GATGGCACGCGTGGCCGCAGGCT
3' ss Score
3.74
Exon sequences
Seq C1 exon
GGCTTTGGGGACGCGGCGGGGGAGCACTGGCTGGGCAATGAAGCTGTGCACCTCCTGACGAGCCGGGAACCCTACGTGCTGCGCGTGGAGCTGCGGGACTGGGAGGGCAGCCAGGTCTATGCCCACTATGGGAGGTTCCAGCTGGACAGCGAGCGGCAGCTCTACAG
Seq A exon
GTGGGTGAGCAGCATCGAGCTGTCCCTGGGCACTGCTGCCCCTGAGCCCCCGGCGTTGGTTGGCACCGCTGCCTGCCTGGGGAGCTGCAGAGTTCCCATGGGGGCTTCGCTGGGATCTTGGCAGATTTCCTCCGTAGGGCCGTCGCTACACTGCCTGCTCCCCCTCTCCCCGGGCTCTTCCCCAAATAGATGCATGAAATTGCAATAAGGCTGAAGGATTTCCCATCCCGGCGAGGCGCGGGGCTGCCACGCACCGCTCGTGCAACCGGGTTTGTCCCCAGGAATGTCCTCATGGAGATGCAGTGGGGACGGTGCGCACTCACGGGGATGTCAGCCAGGCTGTGGGTGGGAGGAGGGGGGCATGGGGGCTCTGCAGACCCACTCAGCGGGAAGGGAAGCGATGGCACGCGTGGCCGCAG
Seq C2 exon
GCTCTCACTGCAGGACTACAGCGGCACGGCCGGGCAGCAGAGCGGCTTGGCCATGCAAGGCACCAACTTCAGCACCCGCGATGCTGACAACGACAACTGCCTCTGCAAGTGTGCCCAGATGCTGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890:ENSGALT00000045797:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGCTGGGCAATGAAG
R:
GACAGCATCTGGGCACACTTG
Band lengths:
270-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]