HsaINT0007989 @ hg19
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:854927-858970:-
Coord C1 exon
chr20:858804-858970
Coord A exon
chr20:855058-858803
Coord C2 exon
chr20:854927-855057
Length
3746 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CACCTCTGGGTGGCCTCCAGGCT
3' ss Score
5.44
Exon sequences
Seq C1 exon
GGCTTCGGAGACCCAGCTGGGGAGCACTGGCTGGGCAATGAAGTGGTGCACCAGCTCACCAGAAGGGCAGCCTACTCTCTGCGTGTGGAGCTGCAAGACTGGGAAGGCCACGAGGCCTATGCCCAGTACGAACATTTCCACCTGGGCAGTGAGAACCAGCTATACAG
Seq A exon
GTGGGTTCGGGGCCCAGGCCGTTGTGGGGGCTGGGGTCTTCAGCTAGTGGGCGGGCTGGGGTCCCCAGGCTAGTGTCTACAGAGTCTGCTCCAACGGTCAGTCTCTGGGTGTCTCCTGTTCCTACCATCTGTCCCCCATTTGGGTGCACGTCATGGGATCTGGAGGTGGCTGGTTAGCACTCAGCATGTCCTAGCCACTGGGTGGAGTGGAAAGAATGTCATTGGTGCTGCCATCCGAGGAGCAAGAAGGGGTCTTCCAAGGTCAGTCACCCCAAGTCAGCCTTTTTACAGAGACCCAGAAGCAAAAGGAGGTGACTTGCCCAGCCTGTCCTATGCCCTGGGGCTGGGTGGAAGGGTCCCTGGGCCAGAAGTTGAAATTCCTGCACTCATTGTGGCCTTGCTCCAGCTTGCTTTGGGAACTTGGACAAGTCAGTCTGGCTTCTCTGAGCTTCTGCTTCTTCAATAGCAGGATGAGCTTAAACATGACGATCTTGTAAGATCATCAAGGTTTCTCACCCCTTCCTCAGCCTGGTTCTTGGTATATTTGGGAAAAGGAACTAGCATTTATTGAGCACCTACTGTGTTCCAGGCACCATTATTCCATTTAATCTTCCCCACAACACTTTGAAGTAGGCATTACTGTACCTACTTTAGTAATATGGAAACTGAGATGCCAAGTTTAAGTATCCTGCCCAAAGTTACAAGTTAAATGAGCTGGAATTTGAACTCAGATCTCCCTGCTGTCAAAACTCATGATGTCTCCACAACATGATATTGCCTCTCAGAGAAATTTAAGGATCTTTTAGATAAGCCTGGGTCCTGGCTATCTCTGAACCAGGATTCACACTCACAGGGCTGCAAAAAATCTCACGTGTCATCTGGTTCTTCATAGATTCCCTCCATAGTTGCAATCATCATCCAGCCGTGCTGGAATACCTCCACTGGTGGGAAGGTCGCTTCCCCACAAGGAATCTCTGAATGACTCTCTGTCCTCCTGAACTTTATGCCTGATTCCACTTCTGGGAACTTCTCAGTGATATGCCCCCACTGTTTCCTCCAGCTGAGTCCCATTTAAGCCACTGGCCACCAAAGCAAAGGCTTTTTTGAGGCAGGGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCACAGCTCACTGTAGCCTTGACCTCCCAGACCTCCCAGGCTCCAGTGACCTTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACTACCATGCCCAGCTGATTTTTGTATTTTTTATAGAAACAGGGTTTCCCTATGTTGCCCAGGTTCTGACATCCCTCCTTATGGGATCCATACCAACCTGATAATGCAAGGTCCAGAGCTGAATGAAAAATTCCCTGGATGTCCCCCTACTCCTCACACCTGACCAGTGAGTAGCTACAACACTATGCTGAGTCCCATTTAAGCCACTGGCCACTAAAGCAAAGGCTTAAATCCCGACTCCATCCCTACTTCCCTGAGTGACCCTGAGCAAGTCCCTTCACGGTTTCATCTGTAGAATGGGTGCTTTAGGCATACCTACCTCAAAAAGGGTGTGATGAGGCCTGAATGAGATACTGCACATGAAGCATTAACACAGTGCCTGGCATGTAGTAAACGCTCAGCAAACAATATTACGATCACTGTCTCGTGGCAGCCTTTCACACCCTTGACTGGACTGCTTTCTGGGAGCACGGCTGTTCCCATCCCCAGACATAGTAAGTGCCTAAAAGGAAGCTGAGGGAGCCTCCCAAGTCTTTTCTACACAGAGAATAATTAAGTCTCATTTCCCTGGCGACAGACACAATCTATGACTGGAGGTGTGGGGACTGAGCCAACCATATACCCAGGCTCTGTATTCCCTCTGAATTCCCACTGGGGAATTTCTCAGGCCCTGCCCTGAGGGTACAAGAGCTTCCTTGAGCTGCCCTGGCCACATCTGCCACCCACTTGCCTCCACCCAGCAAGACCTTCTTTTTTTTTTTTTTTTTTTTTGAGACAGGGCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCACAGCTCACTGCAGCCCTGACCTCCCAGACCTCCCAGGCTCCAGTGACCAGTGACCTTCCCACCTCAGCCTCCCAAGTAGCTGGAATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTTATAGAAACAGGGTTTCCCTATGTTGCCCAGGCTGATCTCGAACTCCTGGGCTCAAGCAATCAGCCTGCCTCAGCCTCCCAAAGTGCGGGGATTACAGGCGTGAGCCACCCTACCCAGCCTCAGCAGGACCTTCTTAATTGCTCCCAAATTGGCTCCCTACTTCAGCTGCCAGTGCAGCCTCCCCCAACCCTGCCATACAAACACCCCGCATTCTCTCCAACCAGGCCCAGCCATCTGCCAAGGGCCAAATAATAACAAGCACTGAATGTTGAGCACTCACCCCGTGACACTGCTCTGCACACTTCACACACTGACATCACCAAATCAATAATAAACGAGGGCAGCACTGCTAATTTCACTATCATTACCACTGGAACAGATGAAGAAACTGAGGCTCAGTGGGGTGAGCCAATCCTCCAAGGCCATGCAGCTCTAAGTGGTAGAGCTGGAATTTGAATCCAGGCTTTCTGCCCCCAGATCTCATGGTCTTCATCACCAGGCAGGCTTGGACATGCCCACCAAGGCCACAGAGCCTGGCAAAGAAATAGAAATCCTCACCTGGCTGGCAGCAGATGTCGAAGCTGCAGAGCTGGGGTGCCCTGGAGCCCAGATCCATGGGGGCTGGTGTAGTCAGGGAAGGCTTCTTGGAAGAGGTGGGTGAATGTGAGGAGGTGCGATGGGGCTGGGGTTGCCAGATCATCATCAGCTGGGGAACAAAATGCACGTAGACTCCCAAGTCAGGCCACACTAGGCTGGCATGTGGCTCTGACCCTCATTCATTCTGAGACTTGAGCAGGTTTCTTTGGCTCTTGGGATTTCTGTTTTCGCATGTGTAAAATGGAAATAGGGTGTTGTGAGGATTAAAGGAGAATGAGTTAACCTATGCAAAGCACTTTGAACACATAGTAGATGCAAAGAATAGAAAAAAAAGAAAGAAAAAGAAACGTTGCCGGGCACGGTGGCTCACATCTGTAATCCCAGTGCTTTGGGAGGCCAAGGCAGGCAGACTGCTTGAGCTCAGGTGTTCAAGACCAGCCTGGGCAACATAGTGAGACCCTATGTTTGTATTTTACAAAAAATACAAACATTAGCTGGGCATGGTGGCCCGTGCCTATTGTCCCATTTACTCAGGAGACTGAGGTGGGAGGATTGCTTGAGCCCAAGAGGTCAAGGTTGTAATGAGCCGTGATTGTGCCACTGCACTCCAGCCTGGCAACAGAGCAAGTTGCTGTCTCTAAAGAAAAAAATGTATATGTATTAGCCATTATTATCATTATTGTGACCATTATCACTTCTCTCCAAGACTCAGGTTCAGTGAGATAGGGGAGGCCTGGCATACAGTAAGTGCTTTGTCCCTGGGAGGCAGCAGGCAGGGAAGGCAATCCAGGAAGGGAAACAGCCCAAGCACTCCACCCAGGCTGGGGCTGTCCCTCCAAGAACACCTGGAGGGGAAGCCCAGCCTGGGACAAAGCCACTGGGGAAGTTCTTGCTCGACACAGCCCCAACCTGACTCTGGGCCCTTCTGCCACCACCACCTCTGGGTGGCCTCCAG
Seq C2 exon
GCTTTCTGTGGTCGGGTACAGCGGCTCAGCAGGGCGCCAGAGCAGCCTGGTCCTGCAGAACACCAGCTTTAGCACCCTTGACTCAGACAACGACCACTGTCTCTGCAAGTGTGCCCAAGTGATGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-ANGPT4:NM_015985:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)