RnoINT0017311 @ rn6
Intron Retention
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147449445-147453748:+
Coord C1 exon
chr3:147449445-147449611
Coord A exon
chr3:147449612-147453617
Coord C2 exon
chr3:147453618-147453748
Length
4006 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CACCTCACCACGGCCTCCAGCCT
3' ss Score
0.15
Exon sequences
Seq C1 exon
GGTTTTGGTAATGTGGCTAGAGAACACTGGCTGGGCAATGAGGCTGTGCACAGCCTCACCAGCAGAACGGCCTACTTGCTACGTGTGGAGCTGCATGACTGGGAAGGCCACCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
Seq A exon
GTGGGCTTGGGGCCCAGGCTTGTGGGCAGTTTGGGGTCCCAAAGCAAGTGGCTGCAGAGCCTGCCCCAAGGGTCATTCCCTGGGCGTTTCCTACTTCCACCATCTGGCCCCCATTTGGGTGCACGTCACGGGGATCTGGAGGTGGCCACTTAGCACTCAGCACATCTTGGACACTGGGTGGGGTGGAAAGACTGTCACTGACGCCACTGTGCCTAGAGCAAGAAGGGATCGTCCGAGGTTAGCCCACCCCATTTACAGGAGTTATGAAACTTGGACTCATCAAGGCCAACCTTTGCTGTGCTCTTCAGCAGGGTTGGGAATAAGGCTATGTATGGTTAAGTCATCGAGGATTTCCACCCCTTCCTCTGTCTGGTTTATGGTGTGTGTTTAGGAAAAGAAGCAAGCATTTCCCAGGCACCTACCTACTATGTCCTGCGCATTGCCTAACCTTGTGAGGCAGACATTACTATGCATGTTTAGTCATAAGGAACCTGAGGCACTGAAAGCTGAGGAGACTCTGAGTTCCTCTAAGGGGACCTCTAAATATCTATTGCCTCATAAAGTTACTTCTACGCACTTCCCTGGCATTCCCCCATGCCTCCCTTTTCTTAGTAAATGTACCTGCTTCCTCCAGAAGGGTGAGCCTGACATCTTCCCTCGCAAGACCCAACCTGATGCTTCAGGTGCAGGAGGCAGAGCTGGAGGGAGCACCCTAAGGCTGAGCCATGCAAGGCTGAGTGAGAGCCCCAAGCACACCCTAAACCCATTTCAGAGGGTGCAGGCTCAAATGTGGGATTCCATCCAAAGCATCCTCATGGTGCCAGGCAGGTAAAAAGTGTTGGAACCGCCATCCCTGTTGCAACCCTTATGTGGGGTGCTGGCCTTCTCCGTGAGAGCCAGAGTCTGGCATCATAAATCAGATAACCTATGCTAAAGCACCTAGCATACAGTGAGTGTTGGGTGAACATTGGAGATCTTTAAATGCTAGATTCAAAGGCAGAACCACACCACCCCGACATCTGTCTAACCGTGTCTACAGGGATCGTGTTCACCATCCAGTTATGCTAAGTTCTCAGCCCTCCCTATACACTTGCATGCAAACTGAGTGTACACCTCTGGCTTTGTCTCTGAACCATGGAGAGCTCCCTGCTATCAGCTCTGGTGACACTCAAAAGGCAGCACGTACTAAACTGGCAGCAGAGCCTTAATGCCAGAATATTGAAACTTGCCCTGTTTGGTCACTAGAGAAAGACTCTGGCCTAAAACTCTGTCCTCAGAGCTGCTTGTATACCAGTGTGGTAGTGGTGGAATGGGGTCAAACATGTTCATAGGCAATCCACTTACCCCACAGAGGTAGGCGCTTCCAGGGGCATCGTTCAGGGGTCAGAGATCCTGGACAATCAAAGAGGACTCCCGAGAGGGGCGAAGCTTGTGGCAAGTCTTTTTGGGAGGGGGATCCCAGAAAATGAGGTTGTTCTCAAAACTAACAGGGAGAGTGGGGCTGGAGAAATAATTCAGTCAATAAAGTCCATGCCTTTGGAGCATAAAGACCCAAGTTTAATCCCAGAACCCAAAATTTTGAAGTCAGGCATGGTAGCATATGCCTACCTCCCCCATCCTGGAGAAATGGAGAACTCACTGGAGCTCAATAGGCCAATGAAATATGCTGTCTCAAAAAATACCTGAGCAAGGACACTAGAGATTGTTCTCTGGCCTCCACGTGCACACAAACATATATGCACACTGATACACAAACACAAAAACATCTACACACACTCATACATTATAAAAATAGCAGAGAGCTGGCATCCAGCTGGGTATATGCTCCCCAAACCTGAATGTTCACTAGGGCTCCCAGGGGCATACAGTGTCCACCTATATAGGAAAGGCTTGGAGGACTAGCTTGGGGTGGCATGCGGGGACTGGAAACCACTAGAAACACTGGAAACTACTAAGGAGGAGCAGGGGAGGGGGCAGGATGACAGCTTGCTCTGGGTCCTATCTCCAGGTCAGCAGCTAAGTGGGAAGAACCACAGAGAAGCCCATAGACAGGGATGAAAGGACCATCAGTGACAGGCAGGAGGCGCTCTTGTTTCTTAGATGCAGTGTCAGGAACCGGCTGAGCACACTTCACACTCTCTCTTGGGGATTCAGGAGAGATTCAAGTTTCTGGGTTTCCTAAGGCAGGTGAGATCAATGGAAGGTTTCCTGGACCCTGGGGTAGAGGTCCCCAGAGAATCACTGACTCCTGTTCCGGTTCCCAGAGAGGAGACGAACATTACTGAGCCAGAGGGAGAAGCCAGTGCCTATAAGTGGGTAGGCAACCTGTGAATCCAACCCTGGAGCCCCTACCTGGTCACAACTGTATGTGACACAGTCCCCAGGGCTAGGACAGCATGCTTAAGGGTTCACTTAGGCCTTCGTGGCTGATCATGAACAGCCTGCCTTACACAGATAAGTAAAGCCTATGGGTGAGAGGCATGGTCTGAGCCAGCCATGTAGAGACATTGGGCCTGCAGGACTAGCTCCTGAGTTCTGCCCTAGCTGTCCCCATCTTCTGCTGCTTCCCTCTATATAGTAGTATAGATTTTATATATATATATATATATATATATATATATATATATATATATACACACACACACATATATATATCACATAGTATATATAGTATATATAATTACATATAGTATGTGTATGTATATTATATGGTTATATATATTATACTGTATGTGTAGCATATATGCATACCTCTTATATAGTATACTATATACTGTATGTATTATATATATACTGCATTATACTTGTACCATGTAAAATATATTACATATAGGTATATAGCATAGAAGCATCTTAGTGACCTGAGCCAGCTCCTGCCTCAAGTTTTCCCTACATGGGAAAGTTTTCCCTAAATGGTCCAGCCAGGTCAACCTGGGCCAAGGACTGAATCCCTAGTTCTGAATATGAGGGGCTCTCACCAAACCCACCTCCCCCTCAGCACACTTCACTGGCTGATGTCACTAAGTCGCACGGTGAACAAAGTCACAGTAAGTCTCTTGTCACCATTTGAATAAGCGAAGATGAGTCTCAGTGGAGTGGAGATGCCTTCCCAGTGCCAGGCAGTGACAGACCGGACATCTTGGAGTTTGAATCCAGGCACTCTGCCCTACCCCAACCCTACAGTCATGCTCCACCCTGGAGGCTTGAACATATTCACGCAGAGTCTAGCAAAGAAACAGAGAAGGCTGATCCATGAGGGCTGGACTGGCTAGGAAGGCTTTACGAAAGAAGGGTGGAATAGAGCAGCTGTTATGTTGAAGCAACAGGGCTGGCAGGCAAAGGGTATTTAACCCTGCCTGGACCAGGCCACTCCAGACTGGACTCTGGCGCTGATGGTTAGAGTCTGAGAACCTGAGCATGCTCCTTCGGTTCTTGGCACCTCCCTTTCCTTGCATAGGAAATGATATTATGAGGGTTAAATTAAAATGAGTTAACCTTCTCAAGACACCGTAACAATGCCTGACCCCAGATGCTGGAAAGACTTCAACCTGCTGCCCTTACTCTTTGTGCCTTCCACTCACAGTTCTCTAGGACCCAAATCCAGACACTTTTAAAGGACCAGCAGCGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCCGAGTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTATATATAATAAATAAATAAATCTTTAAAGGACCAGCAGCAGTGAGCGCTGTGATCTCAGGGTGACAAGTAAGGAGGGCCACCATGAAGGACATGACCTTAGCCTCACAGCAGGGTGCGTTTTCTCAAGCAAAAATAACAGGTTGGAAACTACCAGAACAGAACCCCTGGGGGAGCCCCAGCCTGACTCTGTACCCCTTTCTTTTCCCACCTCACCACGGCCTCCAG
Seq C2 exon
CCTCTCTGTGAATGACAGCAGCATCTCAGCAAGGCTCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGTACCAAAGACATGGACAATGATAACTGCATGTGCAAATGTGCTCAGATGCTGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008:ENSRNOT00000006786:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]